# HG changeset patch
# User iuc
# Date 1728405823 0
# Node ID 8d594609538e9e2e549ebdb03056c00a3bd54e45
# Parent  57343b69e9da6da6eecb83a871799ed55a2694a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meryl commit a3a16149db71f9b72dd7e949df0db08797637312

diff -r 57343b69e9da -r 8d594609538e arithmetic-kmers.xml
--- a/arithmetic-kmers.xml	Thu Apr 25 21:02:35 2024 +0000
+++ b/arithmetic-kmers.xml	Tue Oct 08 16:43:43 2024 +0000
@@ -12,14 +12,14 @@
     <command detect_errors="exit_code"><![CDATA[
     export GALAXY_MEMORY_GB=\$((\${GALAXY_MEMORY_MB:-8192}/1024)) &&
     mkdir  -p ./temp_db/ &&
-    tar -zxf $input_meryldb_02 -C ./temp_db/ &&
+    tar -xmf $input_meryldb_02 --use-compress-program="pigz -p \${GALAXY_SLOTS:-1}" -C ./temp_db/ &&
     mv ./temp_db/* tmp.meryl &&
     meryl
     $arithmetic_operations
     $X
     tmp.meryl
     output read-db.meryl &&
-    tar -zcf read-db.meryldb read-db.meryl
+    tar -cf read-db.meryldb --use-compress-program="pigz -p \${GALAXY_SLOTS:-1}" read-db.meryl
     ]]></command>
     <inputs>
         <param name="arithmetic_operations" type="select" label="Arithmetic operations" help="Select an operation to be executed">
@@ -43,7 +43,7 @@
             <param name="arithmetic_operations" value="increase"/>
             <output name="read_db" ftype="meryldb">
                 <assert_contents>
-                    <has_size value="59500" delta="1000"/>
+                    <has_size value="58946" delta="3000"/>
                     <expand macro="meryldb_archive_assumptions"/>
                 </assert_contents>
             </output>
@@ -54,7 +54,7 @@
             <param name="arithmetic_operations" value="decrease"/>
             <output name="read_db" ftype="meryldb">
                 <assert_contents>
-                    <has_size value="42313" delta="1000"/>
+                    <has_size value="45595" delta="3000"/>
                     <expand macro="meryldb_archive_assumptions"/>
                 </assert_contents>
             </output>
@@ -65,7 +65,7 @@
             <param name="arithmetic_operations" value="multiply"/>
             <output name="read_db" ftype="meryldb">
                 <assert_contents>
-                    <has_size value="60530" delta="1000"/>
+                    <has_size value="60645" delta="3000"/>
                     <expand macro="meryldb_archive_assumptions"/>
                 </assert_contents>
             </output>
@@ -76,7 +76,7 @@
             <param name="arithmetic_operations" value="divide"/>
             <output name="read_db" ftype="meryldb">
                 <assert_contents>
-                    <has_size value="56200" delta="1000"/>
+                    <has_size value="58481" delta="3000"/>
                     <expand macro="meryldb_archive_assumptions"/>
                 </assert_contents>
             </output>
@@ -87,7 +87,7 @@
             <param name="arithmetic_operations" value="divide-round"/>
             <output name="read_db" ftype="meryldb">
                 <assert_contents>
-                    <has_size value="56100" delta="1000"/>
+                    <has_size value="58236" delta="3000"/>
                     <expand macro="meryldb_archive_assumptions"/>
                 </assert_contents>
             </output>
@@ -98,7 +98,7 @@
             <param name="arithmetic_operations" value="modulo"/>
             <output name="read_db" ftype="meryldb">
                 <assert_contents>
-                    <has_size value="37501" delta="1000"/>
+                    <has_size value="36971" delta="3000"/>
                     <expand macro="meryldb_archive_assumptions"/>
                 </assert_contents>
             </output>
diff -r 57343b69e9da -r 8d594609538e macros.xml
--- a/macros.xml	Thu Apr 25 21:02:35 2024 +0000
+++ b/macros.xml	Tue Oct 08 16:43:43 2024 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@TOOL_VERSION@">1.3</token>
     <token name="@GALAXY_TOOL_VERSION@">galaxy</token>
-    <token name="@SUFFIX_VERSION@">6</token>
+    <token name="@SUFFIX_VERSION@">7</token>
     <token name="@PROFILE@">22.01</token>
     <xml name="edam_ontology">
         <edam_topics>                                                                                  
@@ -16,6 +16,7 @@
             <requirement type="package" version="1.1">merqury</requirement>
             <requirement type="package" version="@TOOL_VERSION@">meryl</requirement>
             <requirement type="package" version="1.34">tar</requirement>
+            <requirement type="package" version="2.8">pigz</requirement>
         </requirements>
     </xml>
     <xml name="meryldb_archive_assumptions">