Mercurial > repos > iuc > meryl_count_kmers

diff count-kmers.xml @ 1:bb6774c6aeaf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meryl commit a3a16149db71f9b72dd7e949df0db08797637312
author iuc
date Tue, 08 Oct 2024 16:43:53 +0000
parents a33c838729c5
children e893b7452150
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line diff
--- a/count-kmers.xml	Thu Apr 25 21:00:36 2024 +0000
+++ b/count-kmers.xml	Tue Oct 08 16:43:53 2024 +0000
@@ -27,7 +27,7 @@
     ./input.${input_reads.ext}
     output read-db.meryl &&
     echo 'K-mer size: ${size}' &&
-    tar -zcf read-db.meryldb read-db.meryl
+    tar -cf read-db.meryldb --use-compress-program="pigz -p \${GALAXY_SLOTS:-1}" read-db.meryl
     ]]></command>
     <inputs>
         <param name="count_operation" type="select" label="Count operations" help="Select an operation to be executed">
@@ -63,7 +63,7 @@
             <param name="count_operation" value="count"/>
             <output name="read_db" ftype="meryldb">
                 <assert_contents>
-                    <has_size value="22152" delta="1000"/>
+                    <has_size value="23404" delta="3000"/>
                     <expand macro="meryldb_archive_assumptions"/>
                 </assert_contents>
             </output>
@@ -80,7 +80,7 @@
             <param name="count_operation" value="count"/>
             <output name="read_db" ftype="meryldb">
                 <assert_contents>
-                    <has_size value="22200" delta="1000"/>
+                    <has_size value="22700" delta="3000"/>
                     <expand macro="meryldb_archive_assumptions"/>
                 </assert_contents>
             </output>
@@ -97,7 +97,7 @@
             <param name="count_operation" value="count"/>
             <output name="read_db" ftype="meryldb">
                 <assert_contents>
-                    <has_size value="22200" delta="1000"/>
+                    <has_size value="23155" delta="3000"/>
                     <expand macro="meryldb_archive_assumptions"/>
                 </assert_contents>
             </output>