# HG changeset patch
# User iuc
# Date 1762713407 0
# Node ID e893b74521500df94d94f108f24542cc6766e181
# Parent  bb6774c6aeaf7a116a4e28cf6c2b8d71e3d7bf2d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/meryl commit 6935ad9dddbbb913817552d682d0b2208481dc7f

diff -r bb6774c6aeaf -r e893b7452150 count-kmers.xml
--- a/count-kmers.xml	Tue Oct 08 16:43:53 2024 +0000
+++ b/count-kmers.xml	Sun Nov 09 18:36:47 2025 +0000
@@ -36,19 +36,7 @@
             <option value="count-reverse">Count-reverse: count the occurreces of reverse k-mers</option>
         </param>
         <param name="input_reads" type="data" format="fastq,fastq.gz,fasta,fasta.gz" label="Input sequences" help="Select your reads in FASTA/FASTQ format."/>
-        <conditional name="options_kmer_size">
-            <param name="kmer_size" type="select" label="K-mer size selector">
-                <option value="provide">Set a k-mer size</option>
-                <option value="estimate">Estimate the best k-mer size</option>
-            </param>
-            <when value="provide">
-                <param name="input_kmer_size" type="integer" min="1" max="50" value="" label="K-mer size" help="For a human genome, the best k-mer size is k=21 for both haploid (3.1G) or diploid (6.2G).."/>
-            </when>
-            <when value="estimate">
-                <param name="genome_size" type="integer" min="1000" max="70000000000" value="1000" label="Genome size" help="Haploid genome size or diploid genome size, depending on what we evaluate. In bp. Only required if the k-mer size is not provided."/>
-                <param name="collision_rate" type="float" min="0.0001" max="0.01" value="0.001" label="Tolerable collision rate" help="Tolerable collision rate. By default is 0.001."/>
-            </when>
-        </conditional>
+        <expand macro="kmer_param"/>
     </inputs>
     <outputs>
         <data name="read_db" format="meryldb" from_work_dir="read-db.meryldb"/>
diff -r bb6774c6aeaf -r e893b7452150 macros.xml
--- a/macros.xml	Tue Oct 08 16:43:53 2024 +0000
+++ b/macros.xml	Sun Nov 09 18:36:47 2025 +0000
@@ -1,7 +1,7 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.3</token>
+    <token name="@TOOL_VERSION@">1.4.1</token>
     <token name="@GALAXY_TOOL_VERSION@">galaxy</token>
-    <token name="@SUFFIX_VERSION@">7</token>
+    <token name="@SUFFIX_VERSION@">0</token>
     <token name="@PROFILE@">22.01</token>
     <xml name="edam_ontology">
         <edam_topics>                                                                                  
@@ -19,6 +19,21 @@
             <requirement type="package" version="2.8">pigz</requirement>
         </requirements>
     </xml>
+    <xml name="kmer_param">
+        <conditional name="options_kmer_size">
+            <param name="kmer_size" type="select" label="K-mer size selector">
+                <option value="provide">Set a k-mer size</option>
+                <option value="estimate">Estimate the best k-mer size</option>
+            </param>
+            <when value="provide">
+                <param name="input_kmer_size" type="integer" min="1" value="" label="K-mer size" help="For a human genome, the best k-mer size is k=21 for both haploid (3.1G) or diploid (6.2G).."/>
+            </when>
+            <when value="estimate">
+                <param name="genome_size" type="integer" min="1000" max="70000000000" value="1000" label="Genome size" help="Haploid genome size or diploid genome size, depending on what we evaluate. In bp. Only required if the k-mer size is not provided."/>
+                <param name="collision_rate" type="float" min="0.0001" max="0.01" value="0.001" label="Tolerable collision rate" help="Tolerable collision rate. By default is 0.001."/>
+            </when>
+        </conditional>
+    </xml>
     <xml name="meryldb_archive_assumptions">
         <has_archive_member path="^[^/]+.meryl$" n="1"/>  <!-- folder also counts -->
         <has_archive_member path="[^/]+.meryl/merylIndex" n="1" all="true">