Mercurial > repos > iuc > meryl_histogram_kmers

diff histogram-kmers.xml @ 1:9a0227fa7521 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meryl commit a3a16149db71f9b72dd7e949df0db08797637312
author iuc
date Tue, 08 Oct 2024 16:44:27 +0000
parents da960b744879
children
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--- a/histogram-kmers.xml	Thu Apr 25 21:00:12 2024 +0000
+++ b/histogram-kmers.xml	Tue Oct 08 16:44:27 2024 +0000
@@ -12,7 +12,7 @@
     <command detect_errors="exit_code"><![CDATA[
     export GALAXY_MEMORY_GB=\$((\${GALAXY_MEMORY_MB:-8192}/1024)) &&
     mkdir  -p ./temp_db/ &&
-    tar -zxf $input_meryldb_02 -C ./temp_db/ &&
+    tar -xmf $input_meryldb_02 --use-compress-program="pigz -p \${GALAXY_SLOTS:-1}" -C ./temp_db/ &&
     mv ./temp_db/* tmp.meryl &&
     meryl histogram tmp.meryl > read-db.hist
     ]]></command>