Mercurial > repos > iuc > meryl_print
view print.xml @ 0:08b34a6c34ec draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meryl commit a95f5b04b1219489a327a622184633a561fe5ac0
author | iuc |
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date | Thu, 25 Apr 2024 21:00:59 +0000 |
parents | |
children | 4ffdd07cc5b6 |
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<tool id="meryl_print" name="Meryl" version="@TOOL_VERSION@+@GALAXY_TOOL_VERSION@@SUFFIX_VERSION@" profile="@PROFILE@"> <description>get k-mer counts</description> <macros> <import>macros.xml</import> </macros> <expand macro="edam_ontology"/> <xrefs> <xref type="bio.tools">meryl</xref> </xrefs> <expand macro="requirements"/> <version_command>meryl --version</version_command> <command detect_errors="exit_code"><![CDATA[ export GALAXY_MEMORY_GB=\$((\${GALAXY_MEMORY_MB:-8192}/1024)) && mkdir -p ./temp_db/ && tar -zxf $input_meryldb_02 -C ./temp_db/ && mv ./temp_db/* tmp.meryl && meryl print tmp.meryl > read-db.tabular ]]></command> <inputs> <param name="input_meryldb_02" type="data" format="meryldb" label="Input meryldb"/> </inputs> <outputs> <data name="read_db_print" format="tabular" from_work_dir="read-db.tabular"/> </outputs> <tests> <test expect_num_outputs="1"> <param name="input_meryldb_02" value="maternal.meryldb" ftype="meryldb"/> <output name="read_db_print" file="output_25.read-db.tabular" sort="true"/> </test> </tests> <help> .. class:: infomark **Purpose** Meryl is the k-mer counter. This tool gets the k-mer counts as a table. </help> <expand macro="citations"/> </tool>