Mercurial > repos > iuc > meryl_print

changeset 1:4ffdd07cc5b6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meryl commit a3a16149db71f9b72dd7e949df0db08797637312
author iuc
date Tue, 08 Oct 2024 16:44:16 +0000
parents 08b34a6c34ec
children
files macros.xml print.xml
diffstat 2 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Apr 25 21:00:59 2024 +0000
+++ b/macros.xml	Tue Oct 08 16:44:16 2024 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@TOOL_VERSION@">1.3</token>
     <token name="@GALAXY_TOOL_VERSION@">galaxy</token>
-    <token name="@SUFFIX_VERSION@">6</token>
+    <token name="@SUFFIX_VERSION@">7</token>
     <token name="@PROFILE@">22.01</token>
     <xml name="edam_ontology">
         <edam_topics>                                                                                  
@@ -16,6 +16,7 @@
             <requirement type="package" version="1.1">merqury</requirement>
             <requirement type="package" version="@TOOL_VERSION@">meryl</requirement>
             <requirement type="package" version="1.34">tar</requirement>
+            <requirement type="package" version="2.8">pigz</requirement>
         </requirements>
     </xml>
     <xml name="meryldb_archive_assumptions">
--- a/print.xml	Thu Apr 25 21:00:59 2024 +0000
+++ b/print.xml	Tue Oct 08 16:44:16 2024 +0000
@@ -12,7 +12,7 @@
     <command detect_errors="exit_code"><![CDATA[
     export GALAXY_MEMORY_GB=\$((\${GALAXY_MEMORY_MB:-8192}/1024)) &&
     mkdir  -p ./temp_db/ &&
-    tar -zxf $input_meryldb_02 -C ./temp_db/ &&
+    tar -xmf $input_meryldb_02 --use-compress-program="pigz -p \${GALAXY_SLOTS:-1}" -C ./temp_db/ &&
     mv ./temp_db/* tmp.meryl &&
     meryl print tmp.meryl > read-db.tabular
     ]]></command>