Mercurial > repos > iuc > metaphlan

annotate test-data/test_database_versioned.loc.test @ 14:740fd2d16a28 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 081635c7e118b90aae323f8e41530a1d827e4860
author iuc
date Fri, 20 Sep 2024 20:14:38 +0000
parents b6897977d13e
children
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11
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
1 # Tab separated with 5 columns:
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
3 # - name (Galaxy shows this in the UI)
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
4 # - dbkey
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
5 # - path (folder name containing the Kraken DB)
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
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6 # - db version (whether it is SGB of Metaphlan v4 or not)
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
7 test-db-20210409 "Test Database" test-db ${__HERE__}/test-db SGB
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
8 # the TOY DB should be called in tests with the hidden test parameter enables this will make Metaphlan
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
9 # download the data to the JWD
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
10 mpa_vJan21_TOY_CHOCOPhlAnSGB mpa_vJan21_TOY_CHOCOPhlAnSGB mpa_vJan21_TOY_CHOCOPhlAnSGB_202103 ./ SGB
b6897977d13e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
11 # mpa_vJun23_CHOCOPhlAnSGB_202403 mpa_vJun23_CHOCOPhlAnSGB_202403 mpa_vJun23_CHOCOPhlAnSGB_202403 ${__HERE__}/mpa_vJun23_CHOCOPhlAnSGB_202403/ SGB