annotate metaphlan2krona.xml @ 2:ebb74774457e draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit bfc25b2695b9689c60101f84162610194a33c886"
author iuc
date Fri, 19 Mar 2021 21:39:11 +0000
parents fdbd63e92b01
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fdbd63e92b01 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
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1 <tool id="metaphlan2krona" name="Format MetaPhlAn2" version="@WRAPPER_VERSION@.0">
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3 <description>output for Krona</description>
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5 <macros>
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6 <import>metaphlan2_macros.xml</import>
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7 </macros>
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9 <expand macro="requirements"/>
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10 <expand macro="stdio"/>
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12 <version_command>metaphlan2krona.py -v</version_command>
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fdbd63e92b01 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
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14 <command>
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15 <![CDATA[
fdbd63e92b01 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
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16 metaphlan2krona.py
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17 --profile '$profile'
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18 -k '$krona'
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19 ]]>
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20 </command>
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22 <inputs>
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23 <param argument="--profile" type="data" format="tabular,txt" label="Input file (MetaPhlAN2 output)"/>
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24 </inputs>
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26 <outputs>
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27 <data format="tabular" name="krona" label="${tool.name} on ${on_string}: Formatted file for Krona" />
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28 </outputs>
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30 <tests>
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31 <test>
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32 <param name="profile" value="community_profile.tabular"/>
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33 <output name="krona" file="formatted_to_krona.tabular"/>
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34 </test>
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35 </tests>
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37 <help><![CDATA[
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39 **What it does**
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fdbd63e92b01 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
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41 MetaPhlAn is a computational tool to profile the structure and the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. For more information, check the `user manual <https://bitbucket.org/biobakery/metaphlan2/>`_.
fdbd63e92b01 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
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43 This tool formats MetaPhlAn2 output to be ready for Krona.
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45 ]]></help>
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47 <expand macro="citations"/>
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48 </tool>