Mercurial > repos > iuc > metaphlan2krona

comparison metaphlan2_macros.xml @ 0:fdbd63e92b01 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
author iuc
date Sat, 04 Mar 2017 12:24:03 -0500
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-1:000000000000 0:fdbd63e92b01
1 <?xml version="1.0"?>
2 <macros>
3 <token name="@WRAPPER_VERSION@">2.6.0</token>
4 <xml name="requirements">
5 <requirements>
6 <requirement type="package" version="@WRAPPER_VERSION@">metaphlan2</requirement>
7 <yield/>
8 </requirements>
9 </xml>
10 <xml name="stdio">
11 <stdio>
12 <exit_code range="1:" level="fatal" description="" />
13 <regex match="ERROR"
14 source="stderr"
15 level="fatal"
16 description="" />
17 <regex match="WARNING"
18 source="stderr"
19 level="warning"
20 description="" />
21 </stdio>
22 </xml>
23 <xml name="citations">
24 <citations>
25 <citation type="doi">10.1038/nmeth.3589</citation>
26 </citations>
27 </xml>
28 <xml name="tax_lev">
29 <param argument="--tax_lev" type="select" label="Taxonomic level for the relative abundance output">
30 <option value="a" selected="true">All taxonomic levels</option>
31 <option value="k">Kingdoms (Bacteria and Archaea) only</option>
32 <option value="p">Phyla only</option>
33 <option value="c">Classes only</option>
34 <option value="o">Orders only</option>
35 <option value="f">Families only</option>
36 <option value="g">Genera only</option>
37 <option value="s">Species only</option>
38 </param>
39 </xml>
40 </macros>