Mercurial > repos > iuc > metaphlan_hclust_heatmap

diff generate_test_data.sh @ 0:f7353110d18c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
author: iuc
date: Sat, 04 Mar 2017 12:24:23 -0500
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/generate_test_data.sh	Sat Mar 04 12:24:23 2017 -0500
@@ -0,0 +1,49 @@
+#/usr/bin/env bash
+
+metaphlan_hclust_heatmap.py \
+    --in test-data/merged_community_profile.tabular \
+    --out test-data/heatmap.png \
+    -m 'average' \
+    -d 'braycurtis' \
+    -f 'correlation' \
+    --minv '0' \
+    --tax_lev 'a' \
+    --sdend_h '0.1' \
+    --fdend_w '0.1' \
+    --cm_h '0.03' \
+    --font_size '7' \
+    --clust_line_w '1' \
+    --perc '90' \
+    -c 'jet'
+
+metaphlan_hclust_heatmap.py \
+    --in test-data/merged_community_profile.tabular \
+    --out test-data/heatmap.pdf \
+    -m 'ward' \
+    -d 'euclidean' \
+    -f 'euclidean' \
+    --minv '0' \
+    --tax_lev 'a' \
+    --sdend_h '0.1' \
+    --fdend_w '0.1' \
+    --cm_h '0.03' \
+    --font_size '7' \
+    --clust_line_w '1' \
+    --perc '90' \
+    -c 'pink'
+
+metaphlan_hclust_heatmap.py \
+    --in test-data/merged_community_profile.tabular \
+    --out test-data/heatmap.svg \
+    -m 'complete' \
+    -d 'hamming' \
+    -f 'matching' \
+    --minv '0' \
+    --tax_lev 'a' \
+    --sdend_h '0.1' \
+    --fdend_w '0.1' \
+    --cm_h '0.03' \
+    --font_size '7' \
+    --clust_line_w '1' \
+    --perc '90' \
+    -c 'pink'
\ No newline at end of file