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comparison microsatbed.xml @ 1:dddd7ef63469 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 4f8728c5e0a135c14a0df7d6788e8069b19cc215
author iuc
date Thu, 25 Jul 2024 06:03:17 +0000
parents 2b970db61912
children 3f6e5c701945
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0:2b970db61912 1:dddd7ef63469
2 <tool id="microsatbed" name="STR to bed" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05"> 2 <tool id="microsatbed" name="STR to bed" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>Short Tandem Repeats to bed features from fasta</description> 3 <description>Short Tandem Repeats to bed features from fasta</description>
4 <macros> 4 <macros>
5 <token name="@TOOL_VERSION@">1.3.2</token> 5 <token name="@TOOL_VERSION@">1.3.2</token>
6 <token name="@VERSION_SUFFIX@">0</token> 6 <token name="@VERSION_SUFFIX@">0</token>
7 <token name="@PYFASTX_VERSION@">2.1.0</token>
8 <token name="@PYTHON_VERSION@">3.12.3</token> 7 <token name="@PYTHON_VERSION@">3.12.3</token>
9 <token name="@UCSC_VERSION@">455</token>
10 <macro name="subsetmacro"> 8 <macro name="subsetmacro">
11 <param name="subset" type="select" label="Select at least 1 specific motif length to report" help="Bed features will be output for every motif of the selected length(s) with the minimum required repeats or more" multiple="true"> 9 <param name="subset" type="select" label="Select at least 1 specific motif length to report" help="Bed features will be output for every motif of the selected length(s) with the minimum required repeats or more" multiple="true">
12 <option value="--di" selected="true">All dimers (AC,AG,AT,...)</option> 10 <option value="--di" selected="true">All dimers (AC,AG,AT,...)</option>
13 <option value="--tri">All trimers (ACG,..)</option> 11 <option value="--tri">All trimers (ACG,..)</option>
14 <option value="--tetra">All tetramers (ACGT,..)</option> 12 <option value="--tetra">All tetramers (ACGT,..)</option>
18 </param> 16 </param>
19 </macro> 17 </macro>
20 </macros> 18 </macros>
21 <requirements> 19 <requirements>
22 <requirement version="@PYTHON_VERSION@" type="package">python</requirement> 20 <requirement version="@PYTHON_VERSION@" type="package">python</requirement>
23 <requirement version="@PYFASTX_VERSION@" type="package">pyfastx</requirement> 21 <requirement version="2.1.0" type="package">pyfastx</requirement>
24 <requirement version="@TOOL_VERSION@" type="package">pytrf</requirement> 22 <requirement version="@TOOL_VERSION@" type="package">pytrf</requirement>
25 <requirement version="@UCSC_VERSION@" type="package">ucsc-bedgraphtobigwig</requirement> 23 <requirement version="455" type="package">ucsc-bedgraphtobigwig</requirement>
26 </requirements> 24 </requirements>
27 <required_files> 25 <required_files>
28 <include path="find_str.py"/> 26 <include path="find_str.py"/>
29 </required_files> 27 </required_files>
30 <version_command><![CDATA[python -c "import pytrf; from importlib.metadata import version; print(version('pytrf'))"]]></version_command> 28 <version_command><![CDATA[python -c "import pytrf; from importlib.metadata import version; print(version('pytrf'))"]]></version_command>