# HG changeset patch
# User iuc
# Date 1723625380 0
# Node ID 3f6e5c7019456effc3edeb6e38872bec52c71ce5
# Parent dddd7ef634699aa5571181635c91902c89596886
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 0c8ab2d9c2783fdc33d3eac057f2a29e298d7264
diff -r dddd7ef63469 -r 3f6e5c701945 README.md
--- a/README.md Thu Jul 25 06:03:17 2024 +0000
+++ b/README.md Wed Aug 14 08:49:40 2024 +0000
@@ -42,12 +42,12 @@
This selection runs the pytrf *findstr* option to create gff/csv/tsv outputs as described at the end of https://pytrf.readthedocs.io/en/latest/.
-Quoted here:
+Quote below
- *A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively. The core sequence or repeat unit is generally called motif.
- According to the motif length, tandem repeats can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence repeats (SSRs)
- or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes referred to as variable number of tandem repeats (VNTRs) has longer motif length than microsatellites.
- Pytrf is a lightweight Python C extension for identification of tandem repeats. The pytrf enables to fastly identify both exact or perfect SSRs.
- It also can find generic tandem repeats with any size of motif, such as with maximum motif length of 100 bp. Additionally, it has capability of finding approximate or imperfect tandem repeats*
+*A Tandem repeat (TR) in genomic sequence is a set of adjacent short DNA sequence repeated consecutively. The core sequence or repeat unit is generally called a motif.
+According to the motif length, tandem repeats can be classified as microsatellites and minisatellites. Microsatellites are also known as simple sequence repeats (SSRs)
+or short tandem repeats (STRs) with motif length of 1-6 bp. Minisatellites are also sometimes referred to as variable number of tandem repeats (VNTRs) has longer motif length than microsatellites.
+Pytrf is a lightweight Python C extension for identification of tandem repeats. The pytrf enables to fastly identify both exact or perfect SSRs.
+It also can find generic tandem repeats with any size of motif, such as with maximum motif length of 100 bp. Additionally, it has capability of finding approximate or imperfect tandem repeats*
\ No newline at end of file
diff -r dddd7ef63469 -r 3f6e5c701945 microsatbed.xml
--- a/microsatbed.xml Thu Jul 25 06:03:17 2024 +0000
+++ b/microsatbed.xml Wed Aug 14 08:49:40 2024 +0000
@@ -3,10 +3,11 @@
Short Tandem Repeats to bed features from fasta
1.3.2
- 0
+ 1
3.12.3
-
+
@@ -28,17 +29,17 @@
Use any fasta file from the current history
-
+
-
+
@@ -117,7 +118,7 @@
-
+
@@ -131,7 +132,7 @@
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+
@@ -155,7 +156,7 @@
-
+
@@ -180,7 +181,7 @@
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@@ -203,8 +204,8 @@
-
-
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+
diff -r dddd7ef63469 -r 3f6e5c701945 test-data/builtinnativetsv_sample
--- a/test-data/builtinnativetsv_sample Thu Jul 25 06:03:17 2024 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,978 +0,0 @@
-hpat1 507 526 TTTA 4 5 20
-hpat1 1963 1974 CCCCAC 6 2 12
-hpat1 2146 2163 AAAAAC 6 3 18
-hpat1 3236 3247 TTTTTT 6 2 12
-hpat1 4117 4128 GGCAGG 6 2 12
-hpat1 5472 5483 TTTTTG 6 2 12
-hpat1 5584 5595 AGCCCC 6 2 12
-hpat1 7239 7250 GAAAAA 6 2 12
-hpat1 8173 8184 AAAAAA 6 2 12
-hpat1 8275 8302 A 1 28 28
-hpat1 8303 8314 GAGAGA 6 2 12
-hpat1 8744 8755 GGAGGT 6 2 12
-hpat1 8828 8845 AGAAAA 6 3 18
-hpat1 9495 9506 GGAGGT 6 2 12
-hpat1 9571 9595 AAAAC 5 5 25
-hpat1 11623 11634 AGGGAA 6 2 12
-hpat1 11651 11662 AACAAC 6 2 12
-hpat1 12486 12497 CCTCTG 6 2 12
-hpat1 13457 13468 ACCCTA 6 2 12
-hpat1 13471 13488 CCCTAA 6 3 18
-hpat1 13489 13500 CCCCAA 6 2 12
-hpat1 13501 13518 CCCCAG 6 3 18
-hpat1 13523 13546 AACCCT 6 4 24
-hpat1 13559 13582 CCCTAA 6 4 24
-hpat1 13598 13609 ACCCTA 6 2 12
-hpat1 13612 13635 ACCCTA 6 4 24
-hpat1 13641 13658 AACCCC 6 3 18
-hpat1 13659 13670 AACCCT 6 2 12
-hpat1 13691 13708 ACCCTC 6 3 18
-hpat1 13721 13744 AACCCC 6 4 24
-hpat1 13747 13758 CCCAAC 6 2 12
-hpat1 13767 13778 CTCACC 6 2 12
-hpat1 14149 14164 GCCC 4 4 16
-hpat1 14307 14318 GGCGCA 6 2 12
-hpat1 14336 14347 GGCGCA 6 2 12
-hpat1 14384 14395 GGCGCA 6 2 12
-hpat1 14472 14483 GGGGGG 6 2 12
-hpat1 16148 16159 GAGTGG 6 2 12
-hpat1 16547 16558 CTGAGG 6 2 12
-hpat1 17030 17041 CAGGCA 6 2 12
-hpat1 18072 18083 GTCTGG 6 2 12
-hpat1 18120 18131 TCGTCC 6 2 12
-hpat1 18795 18806 GCAGGC 6 2 12
-hpat1 19207 19218 TGCTCC 6 2 12
-hpat1 20148 20159 GGTGGT 6 2 12
-hpat1 22835 22846 GGGAGG 6 2 12
-hpat1 22939 22950 AAGCCA 6 2 12
-hpat1 24658 24669 AAAAAA 6 2 12
-hpat1 25690 25701 ATTCAC 6 2 12
-hpat1 26499 26510 CCCCTG 6 2 12
-hpat1 29330 29341 CCTCCA 6 2 12
-hpat1 30089 30100 CCAGGA 6 2 12
-hpat1 31904 31915 GTGTGT 6 2 12
-hpat1 32448 32459 GGAGGT 6 2 12
-hpat1 32998 33009 TTTTCT 6 2 12
-hpat1 35194 35205 GCCCAG 6 2 12
-hpat1 35991 36002 CTCTCC 6 2 12
-hpat1 36299 36310 TCTCTG 6 2 12
-hpat1 36311 36338 TC 2 14 28
-hpat1 36363 36374 TCTCTC 6 2 12
-hpat1 37142 37153 AAAAAA 6 2 12
-hpat1 37229 37240 ACACAC 6 2 12
-hpat1 38874 38885 AAAAAA 6 2 12
-hpat1 39406 39417 CATGTG 6 2 12
-hpat1 39489 39500 TTCTAG 6 2 12
-hpat1 39620 39642 T 1 23 23
-hpat1 40503 40514 GTACCA 6 2 12
-hpat1 43740 43764 TCCAT 5 5 25
-hpat1 43807 43826 CACTC 5 4 20
-hpat1 43965 43984 TCCAC 5 4 20
-hpat1 44879 44903 TTCCA 5 5 25
-hpat1 45344 45368 TCCAT 5 5 25
-hpat1 45526 45545 CATTC 5 4 20
-hpat1 45554 45573 TCCAT 5 4 20
-hpat1 46948 46967 TCCAT 5 4 20
-hpat1 47107 47131 TTCCA 5 5 25
-hpat1 47141 47160 ATTCC 5 4 20
-hpat1 47303 47322 TCCAC 5 4 20
-hpat1 48673 48692 TCCAT 5 4 20
-hpat1 48806 48825 ATTCC 5 4 20
-hpat1 49681 49700 ATTCC 5 4 20
-hpat1 49856 49875 ATTCC 5 4 20
-hpat1 50315 50334 TCCAC 5 4 20
-hpat1 50775 50794 TCCAT 5 4 20
-hpat1 51153 51172 ATTCC 5 4 20
-hpat1 52508 52519 GCCTTT 6 2 12
-hpat1 53676 53687 TTTCAG 6 2 12
-hpat1 55005 55016 AAAAAC 6 2 12
-hpat1 58746 58757 GCTTAT 6 2 12
-hpat1 59055 59066 TAGAAA 6 2 12
-hpat1 61658 61669 GGAGGT 6 2 12
-hpat1 61733 61747 AAA 3 5 15
-hpat1 62761 62775 AAA 3 5 15
-hpat1 63859 63874 AAAG 4 4 16
-hpat1 65522 65533 TTTTTT 6 2 12
-hpat1 67692 67703 CTCAGA 6 2 12
-hpat1 68526 68537 TGCCTC 6 2 12
-hpat1 68608 68622 TTT 3 5 15
-hpat1 68851 68862 CAGCCT 6 2 12
-hpat1 69176 69187 CCTTAT 6 2 12
-hpat1 72054 72065 CTCTCC 6 2 12
-hpat1 73588 73599 CAAATA 6 2 12
-hpat1 73891 73924 AC 2 17 34
-hpat1 74873 74884 TCTCTT 6 2 12
-hpat1 76181 76192 TTTGTT 6 2 12
-hpat1 77091 77106 ATAC 4 4 16
-hpat1 77427 77441 TTT 3 5 15
-hpat1 78001 78015 TTT 3 5 15
-hpat1 80746 80757 TTTTCA 6 2 12
-hpat1 80794 80805 CTCTCT 6 2 12
-hpat1 81769 81780 CAAAAA 6 2 12
-hpat1 82355 82369 TTT 3 5 15
-hpat1 83934 83945 TAAATG 6 2 12
-hpat1 84620 84631 TCAAAA 6 2 12
-hpat1 86960 86975 TATA 4 4 16
-hpat1 87245 87256 TTTCTG 6 2 12
-hpat1 87483 87494 TTTTCC 6 2 12
-hpat1 87622 87641 TC 2 10 20
-hpat1 87642 87653 TGTGTG 6 2 12
-hpat1 87657 87684 GT 2 14 28
-hpat1 90387 90401 AAA 3 5 15
-hpat1 91598 91609 CTAGAA 6 2 12
-hpat1 92664 92675 AAGAAA 6 2 12
-hpat1 92820 92831 TCAATG 6 2 12
-hpat1 93618 93629 AACAAA 6 2 12
-hpat1 95760 95771 ATCAGT 6 2 12
-hpat1 97920 97931 GTTTTT 6 2 12
-hpat1 98028 98052 T 1 25 25
-hpat1 98115 98126 ACCTCC 6 2 12
-hpat1 100821 100832 CCTGCC 6 2 12
-hpat1 100974 100985 CCCCAC 6 2 12
-hpat1 102825 102836 GGAGTT 6 2 12
-hpat1 103863 103874 CAGAAA 6 2 12
-hpat1 104935 104946 CTATCT 6 2 12
-hpat1 105272 105283 TTCTTT 6 2 12
-hpat1 105982 105993 AAAAAA 6 2 12
-hpat1 106336 106347 CATTAA 6 2 12
-hpat1 108698 108709 AACACA 6 2 12
-hpat1 109407 109421 TTT 3 5 15
-hpat1 109461 109472 AAAACA 6 2 12
-hpat1 109842 109853 AAACAA 6 2 12
-hpat1 109891 109902 TTAAAT 6 2 12
-hpat1 110331 110342 CAGCAA 6 2 12
-hpat1 110481 110492 AAGAAG 6 2 12
-hpat1 111086 111100 TTT 3 5 15
-hpat1 111899 111910 CATGTG 6 2 12
-hpat1 111999 112010 TTTTTT 6 2 12
-hpat1 112079 112090 ACCTCC 6 2 12
-hpat1 112760 112771 AGAAAG 6 2 12
-hpat1 113453 113464 GAAAAA 6 2 12
-hpat1 113543 113563 A 1 21 21
-hpat1 113689 113700 ATGTGT 6 2 12
-hpat1 113844 113855 TTTGTT 6 2 12
-hpat1 119637 119648 TGGTAC 6 2 12
-hpat1 120465 120476 CTAGAA 6 2 12
-hpat1 120548 120559 CACATG 6 2 12
-hpat1 121012 121035 AAAT 4 6 24
-hpat1 124025 124048 TTGT 4 6 24
-hpat1 124049 124066 TGT 3 6 18
-hpat1 124223 124234 TTTTTA 6 2 12
-hpat1 124605 124616 GAAAAA 6 2 12
-hpat1 125716 125727 AAAATT 6 2 12
-hpat1 125753 125764 CTAAAA 6 2 12
-hpat1 125768 125779 CAAAAA 6 2 12
-hpat1 125885 125896 TTTTTT 6 2 12
-hpat1 125906 125923 TTT 3 6 18
-hpat1 126103 126114 ACATAC 6 2 12
-hpat1 127210 127221 TATATA 6 2 12
-hpat1 128149 128164 TTTG 4 4 16
-hpat1 128765 128776 GTATTT 6 2 12
-hpat1 128861 128872 ATTTTC 6 2 12
-hpat1 129323 129334 ACATAT 6 2 12
-hpat1 130114 130125 GTGTTT 6 2 12
-hpat1 131739 131750 TTTGTC 6 2 12
-hpat1 131826 131837 TTCTGA 6 2 12
-hpat1 132617 132628 AGGAAC 6 2 12
-hpat1 134376 134387 AGATTT 6 2 12
-hpat1 135238 135249 ACATAG 6 2 12
-hpat1 135419 135430 CAACTT 6 2 12
-hpat1 136414 136429 CACA 4 4 16
-hpat1 136957 136968 AAAAAG 6 2 12
-hpat1 137030 137041 AAAAAG 6 2 12
-hpat1 137212 137223 GGAGAG 6 2 12
-hpat1 137369 137380 AAACTA 6 2 12
-hpat1 137535 137546 CAAATC 6 2 12
-hpat1 137558 137575 AAA 3 6 18
-hpat1 137727 137738 GAAGTC 6 2 12
-hpat1 138896 138907 AAAAAA 6 2 12
-hpat1 139228 139242 AAA 3 5 15
-hpat1 140264 140275 TGTGTG 6 2 12
-hpat1 140827 140838 TTTTAT 6 2 12
-hpat1 141801 141812 TAATAT 6 2 12
-hpat1 141988 141999 TGTGTG 6 2 12
-hpat1 142002 142017 TATA 4 4 16
-hpat1 143051 143072 TG 2 11 22
-hpat1 144388 144399 AAAAAA 6 2 12
-hpat1 144871 144888 TTG 3 6 18
-hpat1 147608 147619 CTAGAA 6 2 12
-hpat1 148148 148159 AAAAAA 6 2 12
-hpat1 148417 148428 CTCCCT 6 2 12
-hpat1 148859 148870 TAATAA 6 2 12
-hpat1 150186 150217 AC 2 16 32
-hpat1 152016 152027 AAAAAG 6 2 12
-hpat1 152576 152587 TGTGTG 6 2 12
-hpat1 155739 155750 AAGGCA 6 2 12
-hpat1 156308 156325 TTTTAG 6 3 18
-hpat1 157058 157073 TTTA 4 4 16
-hpat1 158960 158971 ACCTAA 6 2 12
-hpat1 159221 159232 TCCCAA 6 2 12
-hpat1 160996 161007 GCTGCC 6 2 12
-hpat1 166906 166925 AATAA 5 4 20
-hpat1 168215 168240 AC 2 13 26
-hpat1 168672 168683 ATTAAC 6 2 12
-hpat1 168738 168767 GAAAA 5 6 30
-hpat1 170405 170416 AAAAAC 6 2 12
-hpat1 171678 171689 AACAAA 6 2 12
-hpat1 171976 171987 AAATCA 6 2 12
-hpat1 173024 173035 ATGGTG 6 2 12
-hpat1 175792 175803 TTCTTT 6 2 12
-hpat1 175804 175818 TTT 3 5 15
-hpat1 176854 176868 TTT 3 5 15
-hpat1 177755 177766 CTGCTT 6 2 12
-hpat1 180030 180047 TTTTTG 6 3 18
-hpat1 180499 180510 CCCACT 6 2 12
-hpat1 180843 180854 ATTTGT 6 2 12
-hpat1 180871 180902 GT 2 16 32
-hpat1 183233 183244 AAATAA 6 2 12
-hpat1 184102 184116 AAT 3 5 15
-hpat1 184259 184282 T 1 24 24
-hpat1 184344 184355 ACCTCC 6 2 12
-hpat1 184870 184885 TCTC 4 4 16
-hpat1 185111 185122 CCCAGG 6 2 12
-hpat1 186379 186390 AGTGGG 6 2 12
-hpat1 186480 186491 ATTCTT 6 2 12
-hpat1 187054 187075 A 1 22 22
-hpat1 188601 188612 TTCTTT 6 2 12
-hpat1 191292 191303 AAAAAA 6 2 12
-hpat1 192318 192329 AAAAAA 6 2 12
-hpat1 192448 192463 TAAA 4 4 16
-hpat1 195173 195184 TGAAAG 6 2 12
-hpat1 198108 198131 T 1 24 24
-hpat1 200074 200088 TTT 3 5 15
-hpat1 202803 202814 ATATGT 6 2 12
-hpat1 202815 202826 ATATAT 6 2 12
-hpat1 202828 202863 TG 2 18 36
-hpat1 202864 202883 TA 2 10 20
-hpat1 203432 203447 TTTG 4 4 16
-hpat1 203519 203530 ACCTCC 6 2 12
-hpat1 206032 206043 ACAAAT 6 2 12
-hpat1 206400 206419 AGGG 4 5 20
-hpat1 206623 206666 GGAA 4 11 44
-hpat1 211255 211266 CAGAAA 6 2 12
-hpat1 213725 213736 AGATAA 6 2 12
-hpat1 217138 217185 AAAT 4 12 48
-hpat1 218421 218432 AAAAAT 6 2 12
-hpat1 218898 218913 TAAA 4 4 16
-hpat1 219257 219274 TTT 3 6 18
-hpat1 222009 222020 AAAAAA 6 2 12
-hpat1 222072 222093 T 1 22 22
-hpat1 222157 222168 GCCTCC 6 2 12
-hpat1 223960 223971 AAAAAA 6 2 12
-hpat1 224548 224559 AACAAC 6 2 12
-hpat1 225191 225208 AAA 3 6 18
-hpat1 225402 225413 AATTAG 6 2 12
-hpat1 225596 225613 AAA 3 6 18
-hpat1 225617 225628 TGACTC 6 2 12
-hpat1 226078 226089 CTGATT 6 2 12
-hpat1 228565 228576 ATAAAA 6 2 12
-hpat1 228923 228940 AAA 3 6 18
-hpat1 230562 230591 TA 2 15 30
-hpat1 230592 230619 GA 2 14 28
-hpat1 232105 232124 CA 2 10 20
-hpat1 232606 232629 AAAAAG 6 4 24
-hpat1 232635 232682 AAGG 4 12 48
-hpat1 233855 233869 AAA 3 5 15
-hpat1 234129 234140 GGAGGT 6 2 12
-hpat1 234204 234215 AAAAAA 6 2 12
-hpat1 234534 234545 AAAAAA 6 2 12
-hpat1 235842 235853 GGAGGT 6 2 12
-hpat1 235922 235937 AAAT 4 4 16
-hpat1 236235 236246 AAACAC 6 2 12
-hpat1 236491 236502 TTCTCT 6 2 12
-hpat1 237108 237147 AC 2 20 40
-hpat1 237543 237558 AAAT 4 4 16
-hpat1 237921 237932 GGAGGT 6 2 12
-hpat1 237998 238009 AAAAAA 6 2 12
-hpat1 239085 239099 TTT 3 5 15
-hpat1 240473 240487 AAA 3 5 15
-hpat1 240934 240959 AT 2 13 26
-hpat1 241171 241182 ATATAT 6 2 12
-hpat1 241668 241687 TTTTG 5 4 20
-hpat1 242103 242118 AGAT 4 4 16
-hpat1 242122 242161 AGAT 4 10 40
-hpat1 243504 243515 GAGAGA 6 2 12
-hpat1 246294 246329 TTTG 4 9 36
-hpat1 246701 246712 TCCTCA 6 2 12
-hpat1 247307 247324 AAA 3 6 18
-hpat1 247883 247894 ATGTTC 6 2 12
-hpat1 248587 248610 GT 2 12 24
-hpat1 248613 248628 GTGT 4 4 16
-hpat1 248666 248677 TGGCAG 6 2 12
-hpat1 250106 250117 CTCAAT 6 2 12
-hpat1 250129 250152 T 1 24 24
-hpat1 250499 250510 AAGAAG 6 2 12
-hpat1 250826 250837 CTCTAC 6 2 12
-hpat1 250951 250970 TAAA 4 5 20
-hpat1 252089 252100 CTCTCT 6 2 12
-hpat1 252706 252717 ATAAAA 6 2 12
-hpat1 252729 252740 AATAAT 6 2 12
-hpat1 253241 253252 CATGTG 6 2 12
-hpat1 254795 254809 TTT 3 5 15
-hpat1 256098 256113 GGAG 4 4 16
-hpat1 256152 256171 AGGG 4 5 20
-hpat1 256552 256587 AC 2 18 36
-hpat1 257215 257226 AAAAAA 6 2 12
-hpat1 257470 257489 TTTTG 5 4 20
-hpat1 259012 259047 AGGG 4 9 36
-hpat1 259068 259079 AAAGAA 6 2 12
-hpat1 259101 259116 AGAA 4 4 16
-hpat1 262098 262109 GGGGTG 6 2 12
-hpat1 262176 262187 TTCTTC 6 2 12
-hpat1 262313 262324 AGGGGC 6 2 12
-hpat1 264201 264224 GGAG 4 6 24
-hpat1 264325 264348 GGAG 4 6 24
-hpat1 264477 264496 GGAG 4 5 20
-hpat1 264513 264536 GGAG 4 6 24
-hpat1 264545 264564 GGAG 4 5 20
-hpat1 264643 264658 GGGA 4 4 16
-hpat1 264660 264675 GGAG 4 4 16
-hpat1 264700 264715 GGAG 4 4 16
-hpat1 265005 265016 GCCCCG 6 2 12
-hpat1 265567 265584 AAT 3 6 18
-hpat1 265803 265817 AAC 3 5 15
-hpat1 265866 265877 TAACAA 6 2 12
-hpat1 265931 265945 AAC 3 5 15
-hpat1 265994 266005 TAACAA 6 2 12
-hpat1 266186 266197 CTGGAA 6 2 12
-hpat1 266759 266778 TAAA 4 5 20
-hpat1 268395 268406 GGAGGT 6 2 12
-hpat1 268907 268918 TTTTTT 6 2 12
-hpat1 269912 269923 ATGGAC 6 2 12
-hpat1 271171 271182 GATTTA 6 2 12
-hpat1 271562 271573 TGAAAA 6 2 12
-hpat1 272103 272114 AGAGAG 6 2 12
-hpat1 272180 272191 AGGAAA 6 2 12
-hpat1 272192 272209 AGAAAA 6 3 18
-hpat1 273132 273143 TTACTG 6 2 12
-hpat1 273507 273536 A 1 30 30
-hpat1 273765 273794 TTTCTT 6 5 30
-hpat1 273795 273815 T 1 21 21
-hpat1 274215 274226 GAGCCT 6 2 12
-hpat1 274597 274608 GCCTGA 6 2 12
-hpat1 274850 274861 TGTTCT 6 2 12
-hpat1 276183 276205 T 1 23 23
-hpat1 277679 277690 ACACAC 6 2 12
-hpat1 278427 278438 AAAAAA 6 2 12
-hpat1 278575 278586 CCTAGT 6 2 12
-hpat1 279697 279708 TTTTTG 6 2 12
-hpat1 282294 282309 AAAG 4 4 16
-hpat1 282512 282523 AAAAAT 6 2 12
-hpat1 282752 282763 TTGCTT 6 2 12
-hpat1 283102 283116 AAA 3 5 15
-hpat1 283586 283597 GGCGGC 6 2 12
-hpat1 283666 283677 CGGCGG 6 2 12
-hpat1 286603 286614 TGACTC 6 2 12
-hpat1 287369 287380 ACCTCC 6 2 12
-hpat1 288276 288287 AGAAAC 6 2 12
-hpat1 290125 290139 AAA 3 5 15
-hpat1 291615 291630 TAAA 4 4 16
-hpat1 291852 291863 TTTTTT 6 2 12
-hpat1 292027 292038 TTTTTT 6 2 12
-hpat1 292194 292209 TTTC 4 4 16
-hpat1 292210 292227 TTT 3 6 18
-hpat1 292583 292594 TTTTCT 6 2 12
-hpat1 292663 292678 TTCC 4 4 16
-hpat1 292687 292698 TCTTTC 6 2 12
-hpat1 293586 293597 TTGAGG 6 2 12
-hpat1 293663 293682 AAAAT 5 4 20
-hpat1 294172 294183 TCTGCC 6 2 12
-hpat1 296514 296531 TTT 3 6 18
-hpat1 297142 297162 ATT 3 7 21
-hpat1 298177 298196 CCTC 4 5 20
-hpat1 298501 298512 TAATTT 6 2 12
-hpat1 298885 298896 CATCCA 6 2 12
-hpat1 299051 299062 TTTTTC 6 2 12
-hpat1 299063 299077 TTT 3 5 15
-hpat1 300065 300076 CCTCAA 6 2 12
-hpat1 300704 300721 TTT 3 6 18
-hpat1 300989 301004 TTTG 4 4 16
-hpat1 301005 301016 TTTTTG 6 2 12
-hpat1 301468 301479 CCACAC 6 2 12
-hpat1 301529 301558 TAT 3 10 30
-hpat1 302529 302540 TTTTTT 6 2 12
-hpat1 303598 303609 AAAAAA 6 2 12
-hpat1 303764 303775 AAAAAT 6 2 12
-hpat1 304750 304761 AAAAAA 6 2 12
-hpat1 305047 305058 AAAAAA 6 2 12
-hpat1 305434 305467 CA 2 17 34
-hpat1 306054 306065 AAAAAA 6 2 12
-hpat1 306497 306508 TGTTGG 6 2 12
-hpat1 307067 307078 AAAAAA 6 2 12
-hpat1 307299 307310 CAGCTC 6 2 12
-hpat1 308588 308607 TATT 4 5 20
-hpat1 309049 309060 AGCAGC 6 2 12
-hpat1 309969 309980 CCACCC 6 2 12
-hpat1 311300 311311 GAGGGG 6 2 12
-hpat1 311654 311665 CCCCCA 6 2 12
-hpat1 312004 312015 GCGGCT 6 2 12
-hpat1 312356 312373 GCC 3 6 18
-hpat1 312410 312421 GAGGAG 6 2 12
-hpat1 314011 314022 CCCTGT 6 2 12
-hpat1 314319 314336 TTT 3 6 18
-hpat1 314344 314355 AACAAC 6 2 12
-hpat1 315088 315099 ATAATA 6 2 12
-hpat1 315897 315908 CAGGCC 6 2 12
-hpat1 317487 317498 AAAAAA 6 2 12
-hpat1 319116 319127 TCTCTC 6 2 12
-hpat1 321259 321276 TTTTGT 6 3 18
-hpat1 321968 321985 TTC 3 6 18
-hpat1 321986 322033 CTT 3 16 48
-hpat1 322044 322055 TTCTTC 6 2 12
-hpat1 322062 322073 TTCTTC 6 2 12
-hpat1 322074 322085 CTCTTC 6 2 12
-hpat1 322086 322100 TTC 3 5 15
-hpat1 322102 322122 TCT 3 7 21
-hpat1 322123 322140 CCT 3 6 18
-hpat1 322154 322168 TTC 3 5 15
-hpat1 323618 323641 TC 2 12 24
-hpat1 323657 323672 AGAG 4 4 16
-hpat1 323766 323777 ACCATC 6 2 12
-hpat1 323846 323857 TCCCCC 6 2 12
-hpat1 324349 324386 TG 2 19 38
-hpat1 324773 324784 TTGTTG 6 2 12
-hpat1 325310 325321 GGAGGT 6 2 12
-hpat1 325761 325772 TTTTTT 6 2 12
-hpat1 325922 325936 TTT 3 5 15
-hpat1 325962 325977 TTTC 4 4 16
-hpat1 325995 326018 TTCT 4 6 24
-hpat1 326132 326143 GCCTCA 6 2 12
-hpat1 326428 326439 ATAACA 6 2 12
-hpat1 326882 326903 CA 2 11 22
-hpat1 328252 328263 ATATGA 6 2 12
-hpat1 328370 328401 T 1 32 32
-hpat1 329377 329396 TC 2 10 20
-hpat1 329866 329883 AAA 3 6 18
-hpat1 330393 330404 CTTCCC 6 2 12
-hpat1 331403 331414 CACACA 6 2 12
-hpat1 331418 331445 AC 2 14 28
-hpat1 331912 331923 AAAAAT 6 2 12
-hpat1 331929 331940 AAAAAG 6 2 12
-hpat1 332957 332968 GCCCCA 6 2 12
-hpat1 333162 333173 CACCCC 6 2 12
-hpat1 334123 334134 TTGTTG 6 2 12
-hpat1 334268 334329 GT 2 31 62
-hpat1 334655 334666 AAAAAA 6 2 12
-hpat1 335468 335479 CTGCAG 6 2 12
-hpat1 335608 335619 GGCCCT 6 2 12
-hpat1 335804 335815 TTGTAT 6 2 12
-hpat1 336042 336053 GAGGCT 6 2 12
-hpat1 336279 336299 A 1 21 21
-hpat1 336448 336474 A 1 27 27
-hpat1 337163 337174 TAAAAA 6 2 12
-hpat1 339091 339102 GGTGAG 6 2 12
-hpat1 340801 340812 TTTTTT 6 2 12
-hpat1 341153 341170 TTTTTA 6 3 18
-hpat1 342133 342147 AAA 3 5 15
-hpat1 343753 343764 GGAGGT 6 2 12
-hpat1 344175 344186 AAAATT 6 2 12
-hpat1 344342 344366 TTTTC 5 5 25
-hpat1 344367 344384 TTT 3 6 18
-hpat1 344599 344610 GGCCTC 6 2 12
-hpat1 345784 345803 A 1 20 20
-hpat1 347339 347350 ACACAG 6 2 12
-hpat1 347894 347905 GGAGGT 6 2 12
-hpat1 347972 347986 AAA 3 5 15
-hpat1 348658 348673 AATG 4 4 16
-hpat1 348739 348766 ATTT 4 7 28
-hpat1 348822 348833 ACCTCT 6 2 12
-hpat1 349404 349415 CCCCTG 6 2 12
-hpat1 350549 350563 AAA 3 5 15
-hpat1 351013 351024 CACATG 6 2 12
-hpat1 351586 351606 T 1 21 21
-hpat1 352174 352193 AAAG 4 5 20
-hpat1 353018 353033 AAAC 4 4 16
-hpat1 353654 353665 TCTCTC 6 2 12
-hpat1 354071 354088 TTT 3 6 18
-hpat1 355441 355464 A 1 24 24
-hpat1 356742 356753 AGATGG 6 2 12
-hpat1 357237 357248 AATTCA 6 2 12
-hpat1 357793 357804 CCACCC 6 2 12
-hpat1 358582 358593 GTGAGA 6 2 12
-hpat1 359129 359148 AAAAG 5 4 20
-hpat1 359151 359166 GGAA 4 4 16
-hpat1 359807 359826 TTAT 4 5 20
-hpat1 360492 360506 AAC 3 5 15
-hpat1 360640 360651 AGAGCA 6 2 12
-hpat1 360676 360687 AACAAC 6 2 12
-hpat1 360993 361004 AAAGAA 6 2 12
-hpat1 361816 361831 AAAC 4 4 16
-hpat1 362642 362653 CTCTTC 6 2 12
-hpat1 362938 362952 TTT 3 5 15
-hpat1 363151 363162 GATCTT 6 2 12
-hpat1 363465 363479 TTT 3 5 15
-hpat1 364493 364507 TTT 3 5 15
-hpat1 365380 365391 GGAGGT 6 2 12
-hpat1 366470 366484 AAA 3 5 15
-hpat1 367830 367841 GGGGTG 6 2 12
-hpat1 367885 367914 TG 2 15 30
-hpat1 367918 367929 GCGCGC 6 2 12
-hpat1 369146 369157 ACACAC 6 2 12
-hpat1 369223 369234 TTGTTT 6 2 12
-hpat1 370082 370093 ATTAGG 6 2 12
-hpat1 370892 370903 TTATTT 6 2 12
-hpat1 371203 371217 TTT 3 5 15
-hpat1 371649 371663 TTT 3 5 15
-hpat1 372440 372451 ACCTCC 6 2 12
-hpat1 373342 373356 AAA 3 5 15
-hpat1 373851 373862 GTTGGA 6 2 12
-hpat1 376041 376052 GGAGGT 6 2 12
-hpat1 376789 376815 A 1 27 27
-hpat1 377249 377260 CCTGAG 6 2 12
-hpat1 377813 377824 AAAAAA 6 2 12
-hpat1 378349 378360 TTTTTT 6 2 12
-hpat1 379129 379140 TTTTTT 6 2 12
-hpat1 379796 379807 TTTTCT 6 2 12
-hpat1 379824 379838 TTT 3 5 15
-hpat1 379902 379913 ACCTCC 6 2 12
-hpat1 380591 380602 AAAAAA 6 2 12
-hpat1 380955 380969 TTT 3 5 15
-hpat1 384331 384342 AAAAAA 6 2 12
-hpat1 384768 384779 TTTTGT 6 2 12
-hpat1 384884 384895 CTTCTG 6 2 12
-hpat1 386748 386759 CTGCAG 6 2 12
-hpat1 387480 387494 AAA 3 5 15
-hpat1 387951 387962 TGGGGG 6 2 12
-hpat1 388197 388208 GGAGGT 6 2 12
-hpat1 388272 388298 A 1 27 27
-hpat1 390061 390072 AATATA 6 2 12
-hpat1 390511 390522 AAAAAA 6 2 12
-hpat1 390939 390974 CA 2 18 36
-hpat1 391213 391224 AACAAC 6 2 12
-hpat1 391730 391741 TTTTTT 6 2 12
-hpat1 392496 392516 A 1 21 21
-hpat1 393018 393029 GGCAGG 6 2 12
-hpat1 393263 393274 TGGAGC 6 2 12
-hpat1 393714 393725 GCTCCT 6 2 12
-hpat1 393907 393918 GCCCCG 6 2 12
-hpat1 394078 394089 CCGCCG 6 2 12
-hpat1 394172 394183 CACTTT 6 2 12
-hpat1 395341 395352 TTTTTT 6 2 12
-hpat1 395519 395530 TGGGAA 6 2 12
-hpat1 396741 396756 TTTA 4 4 16
-hpat1 398200 398211 TTTTTT 6 2 12
-hpat1 399192 399203 AACAAC 6 2 12
-hpat1 399363 399374 TTTCCT 6 2 12
-hpat1 399446 399457 ACTGGC 6 2 12
-hpat1 399792 399806 AAA 3 5 15
-hpat1 399965 399976 AAAAAA 6 2 12
-hpat1 401245 401256 AAAAAC 6 2 12
-hpat1 402032 402049 TTT 3 6 18
-hpat1 403273 403300 TG 2 14 28
-hpat1 405046 405057 GACCCT 6 2 12
-hpat1 406470 406481 CCACCT 6 2 12
-hpat1 406635 406646 CCCCCA 6 2 12
-hpat1 406676 406687 CCCCAT 6 2 12
-hpat1 406729 406740 CCCCCA 6 2 12
-hpat1 406946 406957 AGCAGC 6 2 12
-hpat1 408399 408410 TTTTTT 6 2 12
-hpat1 409295 409306 CGGAGG 6 2 12
-hpat1 409374 409389 ATAT 4 4 16
-hpat1 411079 411090 TTTTTT 6 2 12
-hpat1 411698 411715 TTT 3 6 18
-hpat1 411778 411789 ACCTCC 6 2 12
-hpat1 412137 412148 ATTTTT 6 2 12
-hpat1 412888 412917 T 1 30 30
-hpat1 413750 413761 CCCAGC 6 2 12
-hpat1 415300 415314 TTT 3 5 15
-hpat1 415761 415772 CAGAGG 6 2 12
-hpat1 416538 416549 CCACAT 6 2 12
-hpat1 418814 418825 CAGGGG 6 2 12
-hpat1 422182 422193 GAAACA 6 2 12
-hpat1 423212 423223 AAATAA 6 2 12
-hpat1 424001 424012 GTCTAG 6 2 12
-hpat1 424336 424347 GCCCAG 6 2 12
-hpat1 424668 424679 CAGCTG 6 2 12
-hpat1 425324 425335 GTCACA 6 2 12
-hpat1 425542 425553 CTACTC 6 2 12
-hpat1 427055 427066 TGAGGC 6 2 12
-hpat1 428931 428942 GAGGCA 6 2 12
-hpat1 429287 429298 ATAAAA 6 2 12
-hpat1 430039 430050 ACACAC 6 2 12
-hpat1 430204 430218 AAA 3 5 15
-hpat1 430892 430903 AAAAAC 6 2 12
-hpat1 433017 433040 T 1 24 24
-hpat1 433197 433214 TTT 3 6 18
-hpat1 433986 433997 CATTGA 6 2 12
-hpat1 434454 434465 GTTGTT 6 2 12
-hpat1 434763 434777 AAA 3 5 15
-hpat1 434915 434932 TTT 3 6 18
-hpat1 435226 435243 TTT 3 6 18
-hpat1 435358 435377 A 1 20 20
-hpat1 436225 436239 TTT 3 5 15
-hpat1 436387 436401 TTT 3 5 15
-hpat1 436833 436848 AAAT 4 4 16
-hpat1 437626 437645 AAAT 4 5 20
-hpat1 438925 438936 AAAAAC 6 2 12
-hpat1 439225 439262 A 1 38 38
-hpat1 439559 439573 AAC 3 5 15
-hpat1 439615 439637 T 1 23 23
-hpat1 439700 439711 ACCTCC 6 2 12
-hpat1 440311 440325 AAA 3 5 15
-hpat1 440725 440748 ATT 3 8 24
-hpat1 440749 440760 TTATTT 6 2 12
-hpat1 442019 442036 AAAATA 6 3 18
-hpat1 442318 442329 CAAAAA 6 2 12
-hpat1 442719 442730 ACCTCC 6 2 12
-hpat1 443008 443022 TTT 3 5 15
-hpat1 443088 443099 ACCTCC 6 2 12
-hpat1 443320 443335 TTTA 4 4 16
-hpat1 444386 444400 TTT 3 5 15
-hpat1 445705 445716 TTATTT 6 2 12
-hpat1 445717 445732 ATTT 4 4 16
-hpat1 446505 446519 AAA 3 5 15
-hpat1 446850 446861 AACAAA 6 2 12
-hpat1 447436 447447 TTATTA 6 2 12
-hpat1 448341 448352 CTGCCC 6 2 12
-hpat1 448561 448572 TCGGCA 6 2 12
-hpat1 449223 449234 ATTGTG 6 2 12
-hpat1 449770 449781 TTTTTT 6 2 12
-hpat1 451023 451034 TTTGTT 6 2 12
-hpat1 451475 451490 TGTA 4 4 16
-hpat1 452085 452108 A 1 24 24
-hpat1 452536 452547 ATCAGC 6 2 12
-hpat1 452702 452727 TA 2 13 26
-hpat1 453077 453091 TTT 3 5 15
-hpat1 453851 453862 AAAAAT 6 2 12
-hpat1 453964 453975 CAGATA 6 2 12
-hpat1 455184 455195 ATTTAA 6 2 12
-hpat1 458294 458305 CTGTTG 6 2 12
-hpat1 459372 459383 AGTCTC 6 2 12
-hpat1 459470 459481 CCTGCC 6 2 12
-hpat1 461444 461455 GGAGGT 6 2 12
-hpat1 461519 461533 AAA 3 5 15
-hpat1 462041 462052 AGACTA 6 2 12
-hpat1 462062 462073 CAAAAG 6 2 12
-hpat1 463723 463734 ACCCAG 6 2 12
-hpat1 463956 463975 AAACA 5 4 20
-hpat1 464056 464067 GCATTT 6 2 12
-hpat1 464824 464843 A 1 20 20
-hpat1 466294 466317 TG 2 12 24
-hpat1 466327 466338 GTGTGT 6 2 12
-hpat1 467570 467581 TTTTTT 6 2 12
-hpat1 468461 468472 ACACAC 6 2 12
-hpat1 469650 469661 TGGGAA 6 2 12
-hpat1 470754 470779 TG 2 13 26
-hpat1 471054 471065 GGAGGC 6 2 12
-hpat1 471128 471165 A 1 38 38
-hpat1 471166 471221 TA 2 28 56
-hpat1 471298 471309 TCTCAC 6 2 12
-hpat1 471602 471613 TTGGAG 6 2 12
-hpat1 472084 472095 TACACA 6 2 12
-hpat1 474126 474140 TTT 3 5 15
-hpat1 476040 476051 TTAAAA 6 2 12
-hpat1 476070 476081 TCAAAA 6 2 12
-hpat1 476120 476131 TTTTTT 6 2 12
-hpat1 476421 476435 TTT 3 5 15
-hpat1 476497 476511 TTT 3 5 15
-hpat1 476790 476804 TTT 3 5 15
-hpat1 476979 476996 AAA 3 6 18
-hpat1 478010 478033 AAAACA 6 4 24
-hpat1 478269 478280 TTTTTT 6 2 12
-hpat1 479363 479374 CCACTG 6 2 12
-hpat1 480111 480131 T 1 21 21
-hpat1 480195 480206 CCTCCG 6 2 12
-hpat1 481379 481390 AAACAG 6 2 12
-hpat1 484422 484443 T 1 22 22
-hpat1 484767 484778 TTTTAC 6 2 12
-hpat1 485404 485415 AACAAA 6 2 12
-hpat1 485646 485657 CATCGG 6 2 12
-hpat1 486045 486062 AAA 3 6 18
-hpat1 486722 486743 T 1 22 22
-hpat1 487157 487168 TTTTTT 6 2 12
-hpat1 489258 489269 TCTCAT 6 2 12
-hpat1 490266 490283 AAAACA 6 3 18
-hpat1 490694 490705 TCAGCT 6 2 12
-hpat1 491439 491462 T 1 24 24
-hpat1 491755 491766 TTTTTT 6 2 12
-hpat1 491956 491977 T 1 22 22
-hpat1 492607 492618 CCTGCC 6 2 12
-hpat1 493273 493284 GGAGGC 6 2 12
-hpat1 493346 493357 CACACA 6 2 12
-hpat1 496259 496273 TTT 3 5 15
-hpat1 497786 497813 AC 2 14 28
-hpat1 498279 498290 TTCTTC 6 2 12
-hpat1 498874 498885 TATTTC 6 2 12
-hpat1 498952 498963 CACACA 6 2 12
-hpat1 499113 499124 AGGTGT 6 2 12
-hpat1 500427 500446 AAAC 4 5 20
-hpat1 500448 500459 AAAAAC 6 2 12
-hpat1 500768 500779 CAGCCT 6 2 12
-hpat1 501705 501716 CACACA 6 2 12
-hpat1 501890 501901 AAATGA 6 2 12
-hpat1 504615 504626 TATTTT 6 2 12
-hpat1 504795 504814 T 1 20 20
-hpat1 505013 505033 T 1 21 21
-hpat1 505628 505639 AAACAA 6 2 12
-hpat1 506288 506299 AAAGAC 6 2 12
-hpat1 507516 507527 AGTAAC 6 2 12
-hpat1 508773 508788 TTTA 4 4 16
-hpat1 509939 509961 A 1 23 23
-hpat1 510502 510519 AAA 3 6 18
-hpat1 510633 510647 AAC 3 5 15
-hpat1 510704 510715 GAGGCT 6 2 12
-hpat1 510735 510746 GGAGGT 6 2 12
-hpat1 510788 510808 A 1 21 21
-hpat1 511425 511436 ATAAAA 6 2 12
-hpat1 511729 511743 AAA 3 5 15
-hpat1 511755 511766 AATAAT 6 2 12
-hpat1 511915 511936 A 1 22 22
-hpat1 513045 513060 GAGA 4 4 16
-hpat1 513078 513121 AG 2 22 44
-hpat1 513354 513365 AAAAAC 6 2 12
-hpat1 514714 514725 TTTTGT 6 2 12
-hpat1 515269 515283 TTT 3 5 15
-hpat1 516547 516561 TTT 3 5 15
-hpat1 517637 517648 CATGTA 6 2 12
-hpat1 518248 518259 TTTTTT 6 2 12
-hpat1 518408 518428 T 1 21 21
-hpat1 518943 518954 AAAAAC 6 2 12
-hpat1 519163 519174 TGTTTT 6 2 12
-hpat1 519687 519702 ATAC 4 4 16
-hpat1 520951 520965 AAA 3 5 15
-hpat1 521038 521049 GGAGGT 6 2 12
-hpat1 521113 521144 A 1 32 32
-hpat1 521818 521835 AAA 3 6 18
-hpat1 522338 522349 GAAAAT 6 2 12
-hpat1 524042 524056 TTT 3 5 15
-hpat1 526369 526380 TTCACA 6 2 12
-hpat1 527826 527837 TTTTTA 6 2 12
-hpat1 528955 528966 CCTGAC 6 2 12
-hpat1 529165 529176 AACTCC 6 2 12
-hpat1 529760 529771 AGCGGC 6 2 12
-hpat1 532566 532585 CT 2 10 20
-hpat1 532765 532779 TAT 3 5 15
-hpat1 534656 534681 T 1 26 26
-hpat1 535074 535085 TTTTAT 6 2 12
-hpat1 535729 535744 GAAA 4 4 16
-hpat1 535746 535773 AAAG 4 7 28
-hpat1 535782 535793 AGAGAG 6 2 12
-hpat1 536150 536161 TTTAGT 6 2 12
-hpat1 538740 538751 AAATAT 6 2 12
-hpat1 538773 538792 AAGG 4 5 20
-hpat1 538800 538811 TTTTTT 6 2 12
-hpat1 539339 539350 GGAGGT 6 2 12
-hpat1 539414 539433 A 1 20 20
-hpat1 540074 540085 AAAAAA 6 2 12
-hpat1 540498 540509 TGTTTT 6 2 12
-hpat1 541889 541900 AACAAC 6 2 12
-hpat1 542948 542959 AAAAAA 6 2 12
-hpat1 542960 542975 ATAT 4 4 16
-hpat1 543137 543148 CAACAA 6 2 12
-hpat1 543959 543970 GGAGGT 6 2 12
-hpat1 544033 544050 AAAAAC 6 3 18
-hpat1 544054 544068 ACC 3 5 15
-hpat1 544522 544533 TTGCTG 6 2 12
-hpat1 544658 544669 TTTTTT 6 2 12
-hpat1 546135 546146 CAAAAA 6 2 12
-hpat1 546382 546393 TTTTTC 6 2 12
-hpat1 546493 546504 AGCCTC 6 2 12
-hpat1 547434 547445 AAATAA 6 2 12
-hpat1 549626 549637 GAGAGG 6 2 12
-hpat1 550639 550658 TGTT 4 5 20
-hpat1 550723 550734 ACCTCC 6 2 12
-hpat1 551639 551650 TTTTAT 6 2 12
-hpat1 552257 552280 AAAAAT 6 4 24
-hpat1 552764 552781 TTA 3 6 18
-hpat1 552848 552859 ACCTCC 6 2 12
-hpat1 556060 556071 GGTTTT 6 2 12
-hpat1 556296 556310 TTT 3 5 15
-hpat1 556975 557006 AAAT 4 8 32
-hpat1 557124 557138 TTT 3 5 15
-hpat1 558010 558021 TGGCTC 6 2 12
-hpat1 558471 558482 GATCTG 6 2 12
-hpat1 562681 562692 CTGTAA 6 2 12
-hpat1 562697 562708 TTTTCT 6 2 12
-hpat1 563925 563936 GAGGCT 6 2 12
-hpat1 564030 564044 AAA 3 5 15
-hpat1 564727 564758 AC 2 16 32
-hpat1 565343 565354 CATGTG 6 2 12
-hpat1 565426 565437 TTCTAG 6 2 12
-hpat1 566572 566583 AGGAGA 6 2 12
-hpat1 566984 566995 AAAACA 6 2 12
-hpat1 568068 568091 T 1 24 24
-hpat1 569331 569342 GGAGGT 6 2 12
-hpat1 569405 569416 AAAAAT 6 2 12
-hpat1 570032 570043 TTTTTT 6 2 12
-hpat1 570541 570558 AAT 3 6 18
-hpat1 571280 571291 TGTATA 6 2 12
-hpat1 571318 571333 TGTG 4 4 16
-hpat1 571613 571633 T 1 21 21
-hpat1 572152 572163 TTATTA 6 2 12
-hpat1 573516 573530 TTG 3 5 15
-hpat1 573851 573862 TTTTTT 6 2 12
-hpat1 575452 575471 AATTA 5 4 20
-hpat1 575472 575483 AATTTT 6 2 12
-hpat1 575669 575680 ATTTTT 6 2 12
-hpat1 575802 575813 ATTTTT 6 2 12
-hpat1 575871 575894 AC 2 12 24
-hpat1 577212 577226 TTT 3 5 15
-hpat1 577377 577388 TTTGTA 6 2 12
-hpat1 578002 578013 CCTTTC 6 2 12
-hpat1 578512 578523 TTTTTT 6 2 12
-hpat1 578671 578702 TA 2 16 32
-hpat1 578703 578717 TTT 3 5 15
-hpat1 578849 578866 TTT 3 6 18
-hpat1 579478 579489 AGAGAG 6 2 12
-hpat1 579493 579504 GGGTCT 6 2 12
-hpat1 580201 580220 A 1 20 20
-hpat1 580329 580340 TTTTTA 6 2 12
-hpat1 580420 580431 ACCTCC 6 2 12
-hpat1 580977 580988 AAAAAA 6 2 12
-hpat1 581225 581242 TTA 3 6 18
-hpat1 581452 581463 CAGGGG 6 2 12
-hpat1 581509 581520 GGGTGG 6 2 12
-hpat1 582118 582141 AAAACA 6 4 24
-hpat1 583541 583556 TGTA 4 4 16
-hpat1 584746 584763 TTT 3 6 18
-hpat1 585485 585496 GAGGCT 6 2 12
-hpat1 587188 587199 GGAGGT 6 2 12
-hpat1 587261 587275 AAA 3 5 15
-hpat1 588890 588901 CAGCCC 6 2 12
-hpat1 589708 589719 CCCCAC 6 2 12
-hpat1 589883 589894 CACACT 6 2 12
-hpat1 591642 591653 CCAGGT 6 2 12
-hpat1 591776 591787 GGGCTT 6 2 12
-hpat1 591897 591908 CAGGGA 6 2 12
-hpat1 592321 592332 GGAGGC 6 2 12
-hpat1 592395 592412 AAA 3 6 18
-hpat1 593794 593805 TCATCT 6 2 12
-hpat1 595349 595360 CGGCGG 6 2 12
-hpat1 595567 595578 TCCCGC 6 2 12
-hpat1 595602 595613 CACCAC 6 2 12
-hpat1 595622 595636 CGC 3 5 15
-hpat1 595738 595749 TCCTCG 6 2 12
-hpat1 597756 597767 TGAGAC 6 2 12
-hpat1 599394 599405 GTGTGC 6 2 12
-hpat1 600006 600025 TC 2 10 20
-hpat1 600026 600037 TATATA 6 2 12
-hpat1 600041 600052 ATATAT 6 2 12
-hpat1 600118 600129 TATATA 6 2 12
-hpat1 601868 601882 TTT 3 5 15
-hpat1 603188 603199 GAAGTG 6 2 12
-hpat1 608484 608499 TGAA 4 4 16
-hpat1 608985 608996 GCTGTG 6 2 12
-hpat1 609780 609795 AAAC 4 4 16
-hpat1 610192 610203 TATCTC 6 2 12
-hpat1 612381 612392 TCACCA 6 2 12
-hpat1 613446 613457 CCATCC 6 2 12
-hpat1 613964 613975 TTCTTG 6 2 12
-hpat1 615611 615622 AGAAGG 6 2 12
-hpat1 615632 615643 AAGAAG 6 2 12
-hpat1 616140 616161 A 1 22 22
-hpat1 617678 617697 TTTTG 5 4 20
-hpat1 620321 620332 GCCAGC 6 2 12
-hpat1 620338 620349 GGGGTG 6 2 12
-hpat1 621050 621061 AGGGCC 6 2 12
-hpat1 621851 621862 TCTCTC 6 2 12
-hpat1 622005 622016 GATTTT 6 2 12
-hpat1 622557 622571 ACC 3 5 15
-hpat1 622586 622606 CAC 3 7 21
-hpat1 623139 623150 ACACAA 6 2 12
-hpat1 623378 623389 TGGACA 6 2 12
-hpat1 623706 623723 AAATAA 6 3 18
-hpat1 624013 624030 AAA 3 6 18
-hpat1 624648 624662 TTT 3 5 15
-hpat1 624724 624735 ACCTCC 6 2 12
-hpat1 624982 624993 TTTTTT 6 2 12
-hpat1 625129 625146 TTTTAT 6 3 18
-hpat1 625595 625606 AGCCAG 6 2 12
-hpat1 627030 627041 GAGGCT 6 2 12
-hpat1 627187 627198 AATAAC 6 2 12
-hpat1 629078 629092 TGA 3 5 15
-hpat1 631394 631405 AACAAC 6 2 12
-hpat1 631429 631443 AAA 3 5 15
-hpat1 632704 632731 A 1 28 28
-hpat1 632732 632743 GTGGGG 6 2 12
-hpat1 633722 633733 ACTCTC 6 2 12
-hpat1 634319 634330 CTTCCT 6 2 12
-hpat1 634612 634623 TCCTTG 6 2 12
-hpat1 635904 635918 AAA 3 5 15
-hpat1 637886 637900 AAA 3 5 15
-hpat1 639391 639402 CGCCGC 6 2 12
-hpat1 639742 639759 GCGGGG 6 3 18
-hpat1 640687 640698 CCTTTC 6 2 12
-hpat1 642772 642783 AAAAAA 6 2 12
-hpat1 646664 646681 AAA 3 6 18
-hpat1 649141 649152 AGCTGG 6 2 12
-hpat1 649225 649236 GTGTGT 6 2 12
-hpat1 649865 649876 GCGAGG 6 2 12
-hpat1 650432 650443 CCGCCC 6 2 12
-hpat1 650444 650455 CGCCGC 6 2 12
-hpat1 651677 651688 CCCCTC 6 2 12
-hpat1 651819 651830 TGCCTC 6 2 12
-hpat1 652399 652410 GATAGT 6 2 12
-hpat1 652602 652613 CTCCTT 6 2 12
-hpat1 653054 653065 GGAAGG 6 2 12
-hpat1 655086 655103 TACTGC 6 3 18
-hpat1 655717 655728 AGCCTC 6 2 12
-hpat1 656009 656020 CCTCCC 6 2 12
-hpat1 657238 657249 AGGCCA 6 2 12
-hpat1 657509 657520 TTGGAC 6 2 12
-hpat1 657610 657621 TGGACC 6 2 12
-hpat1 658606 658633 GT 2 14 28
-hpat1 658934 658949 CCCT 4 4 16
-hpat1 660059 660070 GTGTCA 6 2 12
-hpat1 660332 660343 GCTGTA 6 2 12
-hpat1 660404 660415 CTCTCT 6 2 12
-hpat1 660566 660577 TCTCTC 6 2 12
-hpat1 660592 660621 TC 2 15 30
-hpat1 660622 660647 AC 2 13 26
-hpat1 660896 660927 GT 2 16 32
-hpat1 660985 660996 TGGGGA 6 2 12
-hpat1 661631 661642 CCCCCG 6 2 12
-hpat1 661936 661947 GGCTCG 6 2 12
-hpat1 661953 661964 GGCGGC 6 2 12
-hpat1 662189 662200 CAGAGA 6 2 12
-hpat1 662391 662402 ACACAC 6 2 12
-hpat1 662617 662628 CCTCTC 6 2 12
-hpat1 663604 663618 AAA 3 5 15
-hpat1 663771 663791 AAT 3 7 21
-hpat1 664081 664092 TTTTTT 6 2 12
-hpat1 667668 667679 AATGGG 6 2 12
-hpat1 668025 668036 GTGTAA 6 2 12
-hpat1 668718 668729 CCATTT 6 2 12
-hpat1 669900 669914 AAA 3 5 15
-hpat1 670208 670219 TTTTTA 6 2 12
-hpat1 671191 671202 GAGGGG 6 2 12
-hpat1 671869 671886 TACAAA 6 3 18
-hpat1 671887 671925 TAA 3 13 39
-hpat1 671964 671975 CTGAGG 6 2 12
-hpat1 672093 672104 AACAAC 6 2 12
-hpat1 672105 672116 AAAGAA 6 2 12
-hpat1 672622 672639 AAA 3 6 18
-hpat1 675613 675624 AAGTGT 6 2 12
-hpat1 675731 675742 GGCACA 6 2 12
-hpat1 676339 676350 ATTTCT 6 2 12
-hpat1 676352 676363 TTTATT 6 2 12
-hpat1 677003 677036 GT 2 17 34
-hpat1 677457 677468 AGAAAG 6 2 12
-hpat1 678388 678399 TGAAAC 6 2 12
-hpat1 678858 678869 TTTTTC 6 2 12
-hpat1 682346 682361 TTAT 4 4 16
-hpat1 684578 684589 AATAAC 6 2 12
-hpat1 684953 684964 AGAGCC 6 2 12
-hpat1 685312 685323 GGAGGT 6 2 12
-hpat1 685386 685413 A 1 28 28
-hpat1 686068 686079 CGGGGG 6 2 12
-hpat1 686825 686842 TTT 3 6 18
-hpat1 686899 686910 CAGCCT 6 2 12
-hpat1 687586 687605 TCAA 4 5 20
-hpat1 687651 687662 AGGGAG 6 2 12
-hpat1 688067 688078 TCCTGG 6 2 12
-hpat1 689018 689037 AAAT 4 5 20
-hpat1 690132 690143 TTTCTT 6 2 12
-hpat1 690303 690314 AAGAGG 6 2 12
-hpat1 693707 693718 AGGGGC 6 2 12
-hpat1 694426 694437 TTTTGT 6 2 12
-hpat1 694506 694517 CAGCCT 6 2 12
-hpat1 694598 694609 TTTTTT 6 2 12
-hpat1 694903 694914 TATTTA 6 2 12
-hpat1 695265 695276 CAAGGC 6 2 12
-hpat1 696496 696507 CGCCCC 6 2 12
-hpat1 696718 696729 CGCCCC 6 2 12
-hpat1 697067 697078 TGGGGG 6 2 12
-hpat1 697568 697589 GT 2 11 22
-hpat1 698582 698593 TCTGAT 6 2 12
-hpat1 698951 698962 AATTGA 6 2 12
-hpat1 699157 699171 TTT 3 5 15