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comparison migmap.xml @ 3:587fa797ede9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit ce007cd86035d1fdbcfa7105b593dcadc3e2cf30"
author iuc
date Thu, 05 Dec 2019 05:58:28 -0500
parents 6ad9d48a512e
children 29ec7b3a458b
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2:6ad9d48a512e 3:587fa797ede9
1 <tool id="migmap" name="MiGMAP" version="1.0.2.2"> 1 <tool id="migmap" name="MiGMAP" version="@TOOL_VERSION@">
2 <description>mapper for full-length T- and B-cell repertoire sequencing 2 <description>mapper for full-length T- and B-cell repertoire sequencing
3 </description> 3 </description>
4 <macros>
5 <token name="@TOOL_VERSION@">1.0.3</token>
6 </macros>
4 <requirements> 7 <requirements>
5 <requirement type="package" version="1.0.2">migmap</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">migmap</requirement>
6 </requirements> 9 </requirements>
7 <command detect_errors='exit_code'><![CDATA[ 10 <command detect_errors='exit_code'><![CDATA[
8 export IGBLAST_PATH=\$(dirname \$(which igblastn)) && 11 export IGBLAST_PATH=\$(dirname \$(which igblastn)) &&
9 mkdir -p temp_db/igblast && 12 mkdir -p temp_db/igblast &&
10 ln -s "\${IGBLAST_PATH}/../share/igblast/bin/" ./temp_db/igblast && 13 ln -s "\${IGBLAST_PATH}/../share/igblast/bin/" ./temp_db/igblast &&