Mercurial > repos > iuc > minimap2
comparison minimap2.xml @ 11:f54f5baedfdd draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 9eebe4bec24764deefcf7005abd588be29f4594f"
| author | iuc |
|---|---|
| date | Fri, 19 Mar 2021 09:40:54 +0000 |
| parents | 77b2770508f6 |
| children | 037c6e54df11 |
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| 10:77b2770508f6 | 11:f54f5baedfdd |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="minimap2" name="Map with minimap2" version="@TOOL_VERSION@+galaxy3" profile="17.01"> | 2 <tool id="minimap2" name="Map with minimap2" version="@TOOL_VERSION@+galaxy4" profile="17.01"> |
| 3 <description>A fast pairwise aligner for genomic and spliced nucleotide sequences</description> | 3 <description>A fast pairwise aligner for genomic and spliced nucleotide sequences</description> |
| 4 <macros> | 4 <macros> |
| 5 <token name="@TOOL_VERSION@">2.17</token> | 5 <token name="@TOOL_VERSION@">2.17</token> |
| 6 <xml name="pe_anaylsis_fixed_selector"> | 6 <xml name="pe_anaylsis_fixed_selector"> |
| 7 <param name="analysis_type_selector" type="select" | 7 <param name="analysis_type_selector" type="select" |
| 165 -O $io_options.output_format | 165 -O $io_options.output_format |
| 166 $io_options.eqx | 166 $io_options.eqx |
| 167 --reference reference.fa | 167 --reference reference.fa |
| 168 --output-fmt-option no_ref | 168 --output-fmt-option no_ref |
| 169 -o '$alignment_output' | 169 -o '$alignment_output' |
| 170 #end if | 170 #else: |
| 171 > '$alignment_output' | 171 > '$alignment_output' |
| 172 #end if | |
| 172 ]]> | 173 ]]> |
| 173 </command> | 174 </command> |
| 174 <inputs> | 175 <inputs> |
| 175 <conditional name="reference_source"> | 176 <conditional name="reference_source"> |
| 176 <param name="reference_source_selector" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options. See `Indexes` section of help below. If you would like to perform self-mapping select `history` here, then choose your input file as reference."> | 177 <param name="reference_source_selector" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options. See `Indexes` section of help below. If you would like to perform self-mapping select `history` here, then choose your input file as reference."> |