--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/miniprot_index.xml	Mon Sep 19 12:29:40 2022 +0000
@@ -0,0 +1,34 @@
+<tool id="miniprot_index" name="Miniprot index" version="@TOOL_VERSION@+galaxy0" profile="21.05">
+    <description>build a genome index for miniprot</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">miniprot</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        miniprot -d '$output_index' '$input_genome'
+    ]]></command>
+    <inputs>
+        <param name="input_genome" type="data" format="fasta,fasta.gz" label="Genomic sequence (FASTA)" help="Genomic contigs / scaffolds in FASTA format" />
+    </inputs>
+    <outputs>
+        <!-- refine this when miniprot index format is in Galaxy datatypes -->
+        <data name="output_index" format="binary" label="Miniprot index on ${on_string}" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input_genome" value="input_genome.fasta.gz" ftype="fasta" />
+            <output name="output_index" ftype="binary">
+                <assert_contents>
+                    <has_size value="135707709" delta="1000" />
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
+    <help><![CDATA[
+        Pre-index genomic sequences (contigs, scaffolds or chromosomes) for use in the miniprot_ protein to genome alignment tool.
+
+        .. _miniprot: https://github.com/lh3/miniprot
+    ]]></help>
+</tool>
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