Mercurial > repos > iuc > mitos
diff test-data/refseq63m/ncRNA/OL.cm @ 0:39b6485e2d34 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit 791f28c8a7194fdd1ecec05ad166932d461899b2"
| author | iuc |
|---|---|
| date | Fri, 27 Mar 2020 17:53:04 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/refseq63m/ncRNA/OL.cm Fri Mar 27 17:53:04 2020 -0400 @@ -0,0 +1,284 @@ +INFERNAL1/a [1.1.2 | July 2016] +NAME OL +STATES 103 +NODES 26 +CLEN 33 +W 72 +ALPH RNA +RF no +CONS yes +MAP yes +DATE Thu May 24 22:04:50 2018 +COM [1] /work/berntm/progz/infernal-1.1.2/src//cmbuild -F metazoa/cleaned/OL.cm metazoa/cleaned/OL.stk +COM [2] /work/berntm/progz/infernal-1.1.2/src//cmcalibrate --cpu 8 metazoa/cleaned/OL.cm +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 821 +EFFN 821.000000 +CKSUM 625725364 +NULL 0.000 0.000 0.000 0.000 +EFP7GF -7.6753 0.73996 +ECMLC 0.66646 -5.32898 3.74545 1600000 507768 0.002363 +ECMGC 0.42409 -13.50951 1.11839 1600000 197811 0.002022 +ECMLI 0.64950 -4.93781 4.20090 1600000 453896 0.002644 +ECMGI 0.44313 -12.13032 1.75670 1600000 188195 0.002125 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 6 1 1 72 118 -15.595 -15.535 -0.396 -2.336 -4.839 -7.136 + IL 1 1 2 1 6 1 5 73 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 2 2 3 2 5 1 6 73 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 1 ] 1 44 U A - - + MP 3 2 3 7 6 2 8 72 118 -3.583 -15.139 -0.133 -13.915 -14.195 -7.885 -12.245 -12.523 -11.563 -1.433 -9.914 -11.708 0.213 -10.829 -11.666 -8.732 -11.787 -10.921 3.816 -12.080 -1.656 -4.074 + ML 4 2 3 7 6 1 7 70 117 -4.633 -14.486 -0.348 -2.527 -14.336 -11.866 -9.074 -5.575 -9.989 1.991 + MR 5 2 3 7 6 1 6 69 115 -12.205 -10.934 -3.866 -10.912 -0.107 -9.125 1.937 -5.921 -2.872 -5.708 + D 6 2 3 7 6 0 3 67 114 -12.605 -11.303 -7.100 -7.782 -7.800 -0.025 + IL 7 7 5 7 6 1 9 71 118 -8.577 -0.191 -3.065 -10.495 -11.272 -10.932 0.000 0.000 0.000 0.000 + IR 8 8 6 8 5 1 9 71 117 -7.534 -0.012 -11.045 -9.212 -10.318 0.000 0.000 0.000 0.000 + [ MATP 2 ] 3 42 C G - - + MP 9 8 6 13 6 2 9 70 116 -15.480 -15.419 -0.000 -14.196 -14.475 -14.870 -12.518 -12.793 -11.840 -1.303 -3.500 -11.987 3.560 -4.553 -11.942 -8.991 -12.064 -11.181 1.854 -12.355 -7.895 -4.460 + ML 10 8 6 13 6 1 5 68 115 -11.630 -11.976 -0.220 -2.846 -11.826 -9.356 -4.488 0.595 -5.435 1.276 + MR 11 8 6 13 6 1 5 67 114 -12.115 -10.844 -6.753 -10.823 -0.018 -9.036 -5.602 -7.321 1.986 -6.353 + D 12 8 6 13 6 0 3 67 114 -13.102 -11.800 -0.082 -8.279 -8.297 -4.372 + IL 13 13 5 13 6 1 4 69 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 14 14 6 14 5 1 4 69 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 3 ] 4 41 U A - 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a - - - + ML 78 77 3 80 3 1 2 16 34 -15.506 -0.000 -14.160 0.861 -1.151 0.221 -0.815 + D 79 77 3 80 3 0 0 15 33 -14.327 -1.588 -0.583 + IL 80 80 3 80 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 18 ] 27 - A - - - + ML 81 80 3 83 3 1 1 14 33 -15.583 -0.001 -10.423 1.101 -0.867 0.039 -1.842 + D 82 80 3 83 3 0 0 14 32 -13.746 -9.259 -0.002 + IL 83 83 3 83 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 19 ] 28 - A - - - + ML 84 83 3 86 3 1 1 13 32 -15.582 -0.000 -14.236 1.042 -1.605 0.359 -1.600 + D 85 83 3 86 3 0 0 13 31 -13.756 -0.473 -1.839 + IL 86 86 3 86 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 20 ] 29 - A - - - + ML 87 86 3 89 3 1 1 12 31 -15.687 -0.003 -9.134 1.429 -2.778 -0.188 -1.816 + D 88 86 3 89 3 0 0 13 31 -11.925 -7.438 -0.009 + IL 89 89 3 89 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 21 ] 30 - A - - - + ML 90 89 3 92 3 1 1 11 29 -15.685 -0.000 -14.339 1.405 -3.084 0.132 -2.849 + D 91 89 3 92 3 0 0 12 30 -12.013 -0.017 -6.405 + IL 92 92 3 92 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 22 ] 31 - A - - - + ML 93 92 3 95 3 1 1 9 28 -15.726 -0.000 -14.380 1.335 -2.040 -0.305 -1.232 + D 94 92 3 95 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 95 95 3 95 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 23 ] 32 - A - - - + ML 96 95 3 98 3 1 1 8 26 -15.726 -0.000 -14.380 1.617 -3.723 -0.742 -1.953 + D 97 95 3 98 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 98 98 3 98 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 24 ] 33 - A - - - + ML 99 98 3 101 2 1 1 1 1 * 0.000 1.849 -4.292 -2.088 -3.166 + D 100 98 3 101 2 0 0 0 0 * 0.000 + IL 101 101 3 101 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 25 ] - - - - - - + E 102 101 3 -1 0 0 0 0 0 +// +HMMER3/f [3.1b3 | July 2016] +NAME OL +LENG 33 +MAXL 84 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Thu May 24 22:04:50 2018 +COM [1] /work/berntm/progz/infernal-1.1.2/src//cmbuild -F metazoa/cleaned/OL.cm metazoa/cleaned/OL.stk +NSEQ 821 +EFFN 700.883545 +CKSUM 625725364 +STATS LOCAL MSV -7.1802 0.73996 +STATS LOCAL VITERBI -7.9876 0.73996 +STATS LOCAL FORWARD -2.8371 0.73996 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.23799 1.41836 1.19633 1.79805 + 1.38629 1.38629 1.38629 1.38629 + 0.04341 9.01578 3.16146 1.46634 0.26236 0.00000 * + 1 3.98762 2.83246 8.23308 0.08086 1 U - 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