Mercurial > repos > iuc > mitos

diff test-data/mitos2_NC_012920.gff @ 4:c7553ba39670 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit 5eec533bf2834c3a35cc248acd6e24635c619484
author iuc
date Wed, 01 Mar 2023 22:40:00 +0000
parents 39b6485e2d34
children ca1142e5df8b
line wrap: on
line diff
--- a/test-data/mitos2_NC_012920.gff	Tue Jun 14 17:16:57 2022 +0000
+++ b/test-data/mitos2_NC_012920.gff	Wed Mar 01 22:40:00 2023 +0000
@@ -1,54 +1,54 @@
-NC_012920	mitfi	ncRNA_gene	577	647	.	+	.	ID=gene_trnF;gene_id=trnF
-NC_012920	mitfi	tRNA	577	647	.	+	.	ID=transcript_trnF;Parent=gene_trnF;gene_id=trnF
-NC_012920	mitfi	exon	577	647	9.99999974738e-06	+	.	Parent=transcript_trnF;Name=trnF
-NC_012920	mitfi	ncRNA_gene	648	1601	.	+	.	ID=gene_rrnS;gene_id=rrnS
-NC_012920	mitfi	rRNA	648	1601	.	+	.	ID=transcript_rrnS;Parent=gene_rrnS;gene_id=rrnS
-NC_012920	mitfi	exon	648	1601	0.0	+	.	Parent=transcript_rrnS;Name=rrnS
-NC_012920	mitfi	ncRNA_gene	3230	3304	.	+	.	ID=gene_trnL2;gene_id=trnL2
-NC_012920	mitfi	tRNA	3230	3304	.	+	.	ID=transcript_trnL2;Parent=gene_trnL2;gene_id=trnL2
-NC_012920	mitfi	exon	3230	3304	2.10000007428e-06	+	.	Parent=transcript_trnL2;Name=trnL2
-NC_012920	mitfi	ncRNA_gene	4263	4331	.	+	.	ID=gene_trnI;gene_id=trnI
-NC_012920	mitfi	tRNA	4263	4331	.	+	.	ID=transcript_trnI;Parent=gene_trnI;gene_id=trnI
-NC_012920	mitfi	exon	4263	4331	6.00000021223e-07	+	.	Parent=transcript_trnI;Name=trnI
-NC_012920	mitfi	ncRNA_gene	4402	4469	.	+	.	ID=gene_trnM;gene_id=trnM
-NC_012920	mitfi	tRNA	4402	4469	.	+	.	ID=transcript_trnM;Parent=gene_trnM;gene_id=trnM
-NC_012920	mitfi	exon	4402	4469	0.00340000004508	+	.	Parent=transcript_trnM;Name=trnM
-NC_012920	mitfi	ncRNA_gene	5587	5655	.	-	.	ID=gene_trnA;gene_id=trnA
-NC_012920	mitfi	tRNA	5587	5655	.	-	.	ID=transcript_trnA;Parent=gene_trnA;gene_id=trnA
-NC_012920	mitfi	exon	5587	5655	0.00179999996908	-	.	Parent=transcript_trnA;Name=trnA
-NC_012920	mitfi	ncRNA_gene	5657	5729	.	-	.	ID=gene_trnN;gene_id=trnN
-NC_012920	mitfi	tRNA	5657	5729	.	-	.	ID=transcript_trnN;Parent=gene_trnN;gene_id=trnN
-NC_012920	mitfi	exon	5657	5729	0.0740000009537	-	.	Parent=transcript_trnN;Name=trnN
-NC_012920	mitfi	ncRNA_gene	5826	5891	.	-	.	ID=gene_trnY;gene_id=trnY
-NC_012920	mitfi	tRNA	5826	5891	.	-	.	ID=transcript_trnY;Parent=gene_trnY;gene_id=trnY
-NC_012920	mitfi	exon	5826	5891	4.20000016347e-15	-	.	Parent=transcript_trnY;Name=trnY
-NC_012920	mitfi	ncRNA_gene	7446	7514	.	-	.	ID=gene_trnS2;gene_id=trnS2
-NC_012920	mitfi	tRNA	7446	7514	.	-	.	ID=transcript_trnS2;Parent=gene_trnS2;gene_id=trnS2
-NC_012920	mitfi	exon	7446	7514	0.0399999991059	-	.	Parent=transcript_trnS2;Name=trnS2
-NC_012920	mitfi	ncRNA_gene	7518	7585	.	+	.	ID=gene_trnD;gene_id=trnD
-NC_012920	mitfi	tRNA	7518	7585	.	+	.	ID=transcript_trnD;Parent=gene_trnD;gene_id=trnD
-NC_012920	mitfi	exon	7518	7585	0.000709999992978	+	.	Parent=transcript_trnD;Name=trnD
-NC_012920	mitfi	ncRNA_gene	8295	8364	.	+	.	ID=gene_trnK;gene_id=trnK
-NC_012920	mitfi	tRNA	8295	8364	.	+	.	ID=transcript_trnK;Parent=gene_trnK;gene_id=trnK
-NC_012920	mitfi	exon	8295	8364	0.0379999987781	+	.	Parent=transcript_trnK;Name=trnK
-NC_012920	mitfi	ncRNA_gene	10405	10469	.	+	.	ID=gene_trnR;gene_id=trnR
-NC_012920	mitfi	tRNA	10405	10469	.	+	.	ID=transcript_trnR;Parent=gene_trnR;gene_id=trnR
-NC_012920	mitfi	exon	10405	10469	0.00510000018403	+	.	Parent=transcript_trnR;Name=trnR
-NC_012920	mitfi	ncRNA_gene	12138	12206	.	+	.	ID=gene_trnH;gene_id=trnH
-NC_012920	mitfi	tRNA	12138	12206	.	+	.	ID=transcript_trnH;Parent=gene_trnH;gene_id=trnH
-NC_012920	mitfi	exon	12138	12206	1.99999999495e-06	+	.	Parent=transcript_trnH;Name=trnH
-NC_012920	mitfi	ncRNA_gene	12266	12336	.	+	.	ID=gene_trnL1;gene_id=trnL1
-NC_012920	mitfi	tRNA	12266	12336	.	+	.	ID=transcript_trnL1;Parent=gene_trnL1;gene_id=trnL1
-NC_012920	mitfi	exon	12266	12336	0.0260000005364	+	.	Parent=transcript_trnL1;Name=trnL1
-NC_012920	mitos	gene	14149	14670	.	-	.	ID=gene_nad6;gene_id=nad6
-NC_012920	mitos	mRNA	14149	14670	.	-	.	ID=transcript_nad6;Parent=gene_nad6;gene_id=nad6
-NC_012920	mitos	exon	14149	14670	39.7	-	2.0	Parent=transcript_nad6;Name=nad6
-NC_012920	mitfi	ncRNA_gene	14674	14742	.	-	.	ID=gene_trnE;gene_id=trnE
-NC_012920	mitfi	tRNA	14674	14742	.	-	.	ID=transcript_trnE;Parent=gene_trnE;gene_id=trnE
-NC_012920	mitfi	exon	14674	14742	0.0320000015199	-	.	Parent=transcript_trnE;Name=trnE
-NC_012920	mitfi	ncRNA_gene	15888	15953	.	+	.	ID=gene_trnT;gene_id=trnT
-NC_012920	mitfi	tRNA	15888	15953	.	+	.	ID=transcript_trnT;Parent=gene_trnT;gene_id=trnT
-NC_012920	mitfi	exon	15888	15953	0.001200000057	+	.	Parent=transcript_trnT;Name=trnT
-NC_012920	mitfi	ncRNA_gene	15956	16023	.	-	.	ID=gene_trnP;gene_id=trnP
-NC_012920	mitfi	tRNA	15956	16023	.	-	.	ID=transcript_trnP;Parent=gene_trnP;gene_id=trnP
-NC_012920	mitfi	exon	15956	16023	0.00520000001416	-	.	Parent=transcript_trnP;Name=trnP
+NC_012920\tmitfi\tncRNA_gene\t577\t647\t\.\t\+\t\.\tID=gene_trnF;gene_id=trnF
+NC_012920\tmitfi\ttRNA\t577\t647\t\.\t\+\t\.\tID=transcript_trnF;Parent=gene_trnF;gene_id=trnF
+NC_012920\tmitfi\texon\t577\t647\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnF;Name=trnF
+NC_012920\tmitfi\tncRNA_gene\t648\t1601\t\.\t\+\t\.\tID=gene_rrnS;gene_id=rrnS
+NC_012920\tmitfi\trRNA\t648\t1601\t\.\t\+\t\.\tID=transcript_rrnS;Parent=gene_rrnS;gene_id=rrnS
+NC_012920\tmitfi\texon\t648\t1601\t0\.0\t\+\t\.\tParent=transcript_rrnS;Name=rrnS
+NC_012920\tmitfi\tncRNA_gene\t3230\t3304\t\.\t\+\t\.\tID=gene_trnL2;gene_id=trnL2
+NC_012920\tmitfi\ttRNA\t3230\t3304\t\.\t\+\t\.\tID=transcript_trnL2;Parent=gene_trnL2;gene_id=trnL2
+NC_012920\tmitfi\texon\t3230\t3304\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnL2;Name=trnL2
+NC_012920\tmitfi\tncRNA_gene\t4263\t4331\t\.\t\+\t\.\tID=gene_trnI;gene_id=trnI
+NC_012920\tmitfi\ttRNA\t4263\t4331\t\.\t\+\t\.\tID=transcript_trnI;Parent=gene_trnI;gene_id=trnI
+NC_012920\tmitfi\texon\t4263\t4331\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnI;Name=trnI
+NC_012920\tmitfi\tncRNA_gene\t4402\t4469\t\.\t\+\t\.\tID=gene_trnM;gene_id=trnM
+NC_012920\tmitfi\ttRNA\t4402\t4469\t\.\t\+\t\.\tID=transcript_trnM;Parent=gene_trnM;gene_id=trnM
+NC_012920\tmitfi\texon\t4402\t4469\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnM;Name=trnM
+NC_012920\tmitfi\tncRNA_gene\t5587\t5655\t\.\t-\t\.\tID=gene_trnA;gene_id=trnA
+NC_012920\tmitfi\ttRNA\t5587\t5655\t\.\t-\t\.\tID=transcript_trnA;Parent=gene_trnA;gene_id=trnA
+NC_012920\tmitfi\texon\t5587\t5655\t[-0-9.e]+\t-\t\.\tParent=transcript_trnA;Name=trnA
+NC_012920\tmitfi\tncRNA_gene\t5657\t5729\t\.\t-\t\.\tID=gene_trnN;gene_id=trnN
+NC_012920\tmitfi\ttRNA\t5657\t5729\t\.\t-\t\.\tID=transcript_trnN;Parent=gene_trnN;gene_id=trnN
+NC_012920\tmitfi\texon\t5657\t5729\t[-0-9.e]+\t-\t\.\tParent=transcript_trnN;Name=trnN
+NC_012920\tmitfi\tncRNA_gene\t5826\t5891\t\.\t-\t\.\tID=gene_trnY;gene_id=trnY
+NC_012920\tmitfi\ttRNA\t5826\t5891\t\.\t-\t\.\tID=transcript_trnY;Parent=gene_trnY;gene_id=trnY
+NC_012920\tmitfi\texon\t5826\t5891\t[-0-9.e]+\t-\t\.\tParent=transcript_trnY;Name=trnY
+NC_012920\tmitfi\tncRNA_gene\t7446\t7514\t\.\t-\t\.\tID=gene_trnS2;gene_id=trnS2
+NC_012920\tmitfi\ttRNA\t7446\t7514\t\.\t-\t\.\tID=transcript_trnS2;Parent=gene_trnS2;gene_id=trnS2
+NC_012920\tmitfi\texon\t7446\t7514\t[-0-9.e]+\t-\t\.\tParent=transcript_trnS2;Name=trnS2
+NC_012920\tmitfi\tncRNA_gene\t7518\t7585\t\.\t\+\t\.\tID=gene_trnD;gene_id=trnD
+NC_012920\tmitfi\ttRNA\t7518\t7585\t\.\t\+\t\.\tID=transcript_trnD;Parent=gene_trnD;gene_id=trnD
+NC_012920\tmitfi\texon\t7518\t7585\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnD;Name=trnD
+NC_012920\tmitfi\tncRNA_gene\t8295\t8364\t\.\t\+\t\.\tID=gene_trnK;gene_id=trnK
+NC_012920\tmitfi\ttRNA\t8295\t8364\t\.\t\+\t\.\tID=transcript_trnK;Parent=gene_trnK;gene_id=trnK
+NC_012920\tmitfi\texon\t8295\t8364\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnK;Name=trnK
+NC_012920\tmitfi\tncRNA_gene\t10405\t10469\t\.\t\+\t\.\tID=gene_trnR;gene_id=trnR
+NC_012920\tmitfi\ttRNA\t10405\t10469\t\.\t\+\t\.\tID=transcript_trnR;Parent=gene_trnR;gene_id=trnR
+NC_012920\tmitfi\texon\t10405\t10469\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnR;Name=trnR
+NC_012920\tmitfi\tncRNA_gene\t12138\t12206\t\.\t\+\t\.\tID=gene_trnH;gene_id=trnH
+NC_012920\tmitfi\ttRNA\t12138\t12206\t\.\t\+\t\.\tID=transcript_trnH;Parent=gene_trnH;gene_id=trnH
+NC_012920\tmitfi\texon\t12138\t12206\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnH;Name=trnH
+NC_012920\tmitfi\tncRNA_gene\t12266\t12336\t\.\t\+\t\.\tID=gene_trnL1;gene_id=trnL1
+NC_012920\tmitfi\ttRNA\t12266\t12336\t\.\t\+\t\.\tID=transcript_trnL1;Parent=gene_trnL1;gene_id=trnL1
+NC_012920\tmitfi\texon\t12266\t12336\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnL1;Name=trnL1
+NC_012920\tmitos\tgene\t14149\t14670\t\.\t-\t\.\tID=gene_nad6;gene_id=nad6
+NC_012920\tmitos\tmRNA\t14149\t14670\t\.\t-\t\.\tID=transcript_nad6;Parent=gene_nad6;gene_id=nad6
+NC_012920\tmitos\texon\t14149\t14670\t[-0-9.e]+\t-\t2\.0\tParent=transcript_nad6;Name=nad6
+NC_012920\tmitfi\tncRNA_gene\t14674\t14742\t\.\t-\t\.\tID=gene_trnE;gene_id=trnE
+NC_012920\tmitfi\ttRNA\t14674\t14742\t\.\t-\t\.\tID=transcript_trnE;Parent=gene_trnE;gene_id=trnE
+NC_012920\tmitfi\texon\t14674\t14742\t[-0-9.e]+\t-\t\.\tParent=transcript_trnE;Name=trnE
+NC_012920\tmitfi\tncRNA_gene\t15888\t15953\t\.\t\+\t\.\tID=gene_trnT;gene_id=trnT
+NC_012920\tmitfi\ttRNA\t15888\t15953\t\.\t\+\t\.\tID=transcript_trnT;Parent=gene_trnT;gene_id=trnT
+NC_012920\tmitfi\texon\t15888\t15953\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnT;Name=trnT
+NC_012920\tmitfi\tncRNA_gene\t15956\t16023\t\.\t-\t\.\tID=gene_trnP;gene_id=trnP
+NC_012920\tmitfi\ttRNA\t15956\t16023\t\.\t-\t\.\tID=transcript_trnP;Parent=gene_trnP;gene_id=trnP
+NC_012920\tmitfi\texon\t15956\t16023\t[-0-9.e]+\t-\t\.\tParent=transcript_trnP;Name=trnP