Mercurial > repos > iuc > mothur_chop_seqs

annotate test-data/example.biom @ 1:810855b6dac9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 721531d2e9fd1e208a3fba8cfbe5dcd572599ca2
author iuc
date Tue, 05 Sep 2017 17:16:00 -0400
parents b7635a7037a7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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1 {
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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2 "id":null,
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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3 "format": "Biological Observation Matrix 0.9.1-dev",
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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4 "format_url": "http://biom-format.org/documentation/format_versions/biom-1.0.html",
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5 "type": "OTU table",
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6 "generated_by": "QIIME revision 1.4.0-dev",
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7 "date": "2011-12-19T19:00:00",
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8 "rows":[
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9 {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}},
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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10 {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}},
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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11 {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}},
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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12 {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}},
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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13 {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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14 ],
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15 "columns":[
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16 {"id":"Sample1", "metadata":{
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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17 "BarcodeSequence":"CGCTTATCGAGA",
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18 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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19 "BODY_SITE":"gut",
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20 "Description":"human gut"}},
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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21 {"id":"Sample2", "metadata":{
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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22 "BarcodeSequence":"CATACCAGTAGC",
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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23 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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24 "BODY_SITE":"gut",
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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25 "Description":"human gut"}},
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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26 {"id":"Sample3", "metadata":{
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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27 "BarcodeSequence":"CTCTCTACCTGT",
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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28 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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29 "BODY_SITE":"gut",
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30 "Description":"human gut"}},
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31 {"id":"Sample4", "metadata":{
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32 "BarcodeSequence":"CTCTCGGCCTGT",
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33 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
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34 "BODY_SITE":"skin",
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35 "Description":"human skin"}},
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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36 {"id":"Sample5", "metadata":{
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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37 "BarcodeSequence":"CTCTCTACCAAT",
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38 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
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39 "BODY_SITE":"skin",
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40 "Description":"human skin"}},
b7635a7037a7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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41 {"id":"Sample6", "metadata":{
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42 "BarcodeSequence":"CTAACTACCAAT",
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43 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
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44 "BODY_SITE":"skin",
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45 "Description":"human skin"}}
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46 ],
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47 "matrix_type": "dense",
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48 "matrix_element_type": "int",
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49 "shape": [5,6],
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50 "data": [[0,0,1,0,0,0],
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51 [5,1,0,2,3,1],
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52 [0,0,1,4,2,0],
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53 [2,1,1,0,0,1],
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54 [0,1,1,0,0,0]]
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55 }