Mercurial > repos > iuc > mothur_chop_seqs

comparison chop.seqs.xml @ 2:35a4e758bbed draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ca8dc573528ab7c5290bc6ca029cb989f4755db6
author iuc
date Fri, 08 Sep 2017 14:54:33 -0400
parents b7635a7037a7
children c8b6add22353
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1:810855b6dac9 2:35a4e758bbed
43 <option value="front">front</option> 43 <option value="front">front</option>
44 <option value="back">back</option> 44 <option value="back">back</option>
45 </param> 45 </param>
46 <param name="countgaps" type="boolean" truevalue="true" falsevalue="false" checked="false" label="countgaps - Count gaps as bases"/> 46 <param name="countgaps" type="boolean" truevalue="true" falsevalue="false" checked="false" label="countgaps - Count gaps as bases"/>
47 <param name="short" type="boolean" truevalue="true" falsevalue="false" checked="false" label="short - keep sequences that are too short to chop"/> 47 <param name="short" type="boolean" truevalue="true" falsevalue="false" checked="false" label="short - keep sequences that are too short to chop"/>
48 <param name="name" type="data" format="name" optional="true" label="name file"/> 48 <param name="name" type="data" format="mothur.names" optional="true" label="name file"/>
49 <param name="group" type="data" format="group" optional="true" label="group file"/> 49 <param name="group" type="data" format="mothur.groups" optional="true" label="group file"/>
50 <param name="count" type="data" format="mothur.count_table" optional="true" label="count file"/> 50 <param name="count" type="data" format="mothur.count_table" optional="true" label="count file"/>
51 </inputs> 51 </inputs>
52 <outputs> 52 <outputs>
53 <expand macro="logfile-output"/> 53 <expand macro="logfile-output"/>
54 <data name="out_fasta" format_source="fasta" from_work_dir="fasta*.chop.fasta" label="${tool.name} on ${on_string}: chop.fasta"/> 54 <data name="out_fasta" format_source="fasta" from_work_dir="fasta*.chop.fasta" label="${tool.name} on ${on_string}: chop.fasta"/>