Mercurial > repos > iuc > mothur_classify_tree

comparison classify.tree.xml @ 2:813305556713 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ca8dc573528ab7c5290bc6ca029cb989f4755db6
author iuc
date Fri, 08 Sep 2017 14:42:44 -0400
parents 636e98c0966e
children cf0f6c79bd1b
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1:bf8dfa68aae5 2:813305556713
31 ]]></command> 31 ]]></command>
32 <inputs> 32 <inputs>
33 <param name="taxonomy" type="data" format="mothur.ref.taxonomy" optional="true" label="taxonomy - Taxonomy to screen"/> 33 <param name="taxonomy" type="data" format="mothur.ref.taxonomy" optional="true" label="taxonomy - Taxonomy to screen"/>
34 <param name="tree" type="data" format="txt" label="tree - Sequences to filter"/> 34 <param name="tree" type="data" format="txt" label="tree - Sequences to filter"/>
35 <param name="name" type="data" format="mothur.names" optional="true" label="name - Sequences Name reference file"/> 35 <param name="name" type="data" format="mothur.names" optional="true" label="name - Sequences Name reference file"/>
36 <param name="group" type="data" format="group" optional="true" label="group - Sequences Group reference"/> 36 <param name="group" type="data" format="mothur.groups" optional="true" label="group - Sequences Group reference"/>
37 <param name="cutoff" type="integer" value="51" min="51" max="100" optional="true" label="cutoff - consensus confidence threshold" help="The default is 51, meaning 51%. Cutoff cannot be below 51"/> 37 <param name="cutoff" type="integer" value="51" min="51" max="100" optional="true" label="cutoff - consensus confidence threshold" help="The default is 51, meaning 51%. Cutoff cannot be below 51"/>
38 </inputs> 38 </inputs>
39 <outputs> 39 <outputs>
40 <expand macro="logfile-output"/> 40 <expand macro="logfile-output"/>
41 <data name="out_tree" format="txt" from_work_dir="tree.*taxonomy.tre" label="${tool.name} on ${on_string}: taxonomy.tre"/> 41 <data name="out_tree" format="txt" from_work_dir="tree.*taxonomy.tre" label="${tool.name} on ${on_string}: taxonomy.tre"/>