Mercurial > repos > iuc > mothur_get_mimarkspackage
comparison test-data/biosample.xml @ 0:ad446a792958 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
| author | iuc |
|---|---|
| date | Fri, 19 May 2017 05:59:44 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:ad446a792958 |
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| 1 <BioSampleAttributes> | |
| 2 <Attribute> | |
| 3 <Name>EDTA inhibitor tested</Name> | |
| 4 <HarmonizedName>edta_inhibitor_tested</HarmonizedName> | |
| 5 <Description>Was carbapenemase activity tested in the presence of EDTA? If carbapenemase activity was tested in the presence of EDTA, the response should be "yes", otherwise "no”.</Description> | |
| 6 <Format>['', 'yes', 'no', 'missing', 'not applicable', 'not collected']</Format> | |
| 7 <Synonym>edta inhibitor tested</Synonym> | |
| 8 <Package use="mandatory">Beta-lactamase.1.0</Package> | |
| 9 </Attribute> | |
| 10 <Attribute> | |
| 11 <Name>FAO classification</Name> | |
| 12 <HarmonizedName>fao_class</HarmonizedName> | |
| 13 <Description>soil classification from the FAO World Reference Database for Soil Resources</Description> | |
| 14 <Format>{term}</Format> | |
| 15 <Synonym>fao class</Synonym> | |
| 16 <Synonym>fao classification</Synonym> | |
| 17 <Synonym>soil taxonomic/fao classification</Synonym> | |
| 18 <Package use="optional" group_name="Soil">MIGS.ba.soil.4.0</Package> | |
| 19 <Package use="optional" group_name="Soil">MIGS.eu.soil.4.0</Package> | |
| 20 <Package use="optional" group_name="Soil">MIGS.vi.soil.4.0</Package> | |
| 21 <Package use="optional" group_name="Soil">MIMARKS.specimen.soil.4.0</Package> | |
| 22 <Package use="optional" group_name="Soil">MIMARKS.survey.soil.4.0</Package> | |
| 23 <Package use="optional" group_name="Soil">MIMS.me.soil.4.0</Package> | |
| 24 </Attribute> | |
| 25 <Attribute> | |
| 26 <Name>HIV status</Name> | |
| 27 <HarmonizedName>hiv_stat</HarmonizedName> | |
| 28 <Description>HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]</Description> | |
| 29 <Format>{boolean};{boolean}</Format> | |
| 30 <Synonym>hiv stat</Synonym> | |
| 31 <Synonym>hiv status</Synonym> | |
| 32 </Attribute> | |
| 33 </BioSampleAttributes> |