Mercurial > repos > iuc > mothur_lefse
view test-data/example.biom @ 7:7691a4b846fc draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d"
author | iuc |
---|---|
date | Thu, 05 Nov 2020 23:25:55 +0000 |
parents | 1c04b0449893 |
children |
line wrap: on
line source
{ "id":null, "format": "Biological Observation Matrix 0.9.1-dev", "format_url": "http://biom-format.org/documentation/format_versions/biom-1.0.html", "type": "OTU table", "generated_by": "QIIME revision 1.4.0-dev", "date": "2011-12-19T19:00:00", "rows":[ {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}, {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}}, {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}}, {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}}, {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}} ], "columns":[ {"id":"Sample1", "metadata":{ "BarcodeSequence":"CGCTTATCGAGA", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample2", "metadata":{ "BarcodeSequence":"CATACCAGTAGC", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample3", "metadata":{ "BarcodeSequence":"CTCTCTACCTGT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample4", "metadata":{ "BarcodeSequence":"CTCTCGGCCTGT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"skin", "Description":"human skin"}}, {"id":"Sample5", "metadata":{ "BarcodeSequence":"CTCTCTACCAAT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"skin", "Description":"human skin"}}, {"id":"Sample6", "metadata":{ "BarcodeSequence":"CTAACTACCAAT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"skin", "Description":"human skin"}} ], "matrix_type": "dense", "matrix_element_type": "int", "shape": [5,6], "data": [[0,0,1,0,0,0], [5,1,0,2,3,1], [0,0,1,4,2,0], [2,1,1,0,0,1], [0,1,1,0,0,0]] }