Mercurial > repos > iuc > mothur_make_biom
comparison tools.yaml @ 0:388291e9ab3f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
| author | iuc |
|---|---|
| date | Fri, 19 May 2017 04:58:19 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:388291e9ab3f |
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| 1 --- | |
| 2 # This is a sample file to be used as a reference for populating a list of | |
| 3 # tools that you wish to install into Galaxy from a Tool Shed via the | |
| 4 # `install_tool_shed_tools.py` script. | |
| 5 # | |
| 6 # For each tool you want to install, you must provide the following keys: | |
| 7 # * name: this is is the name of the tool to install | |
| 8 # * owner: owner of the Tool Shed repository from where the tools is being | |
| 9 # installed | |
| 10 # Further, you need to provide **one** of the following two keys: | |
| 11 # * tool_panel_section_id: ID of the tool panel section where you want the | |
| 12 # tool to be installed. The section ID can be found | |
| 13 # in Galaxy's `shed_tool_conf.xml` config file. Note | |
| 14 # that the specified section must exist in this file. | |
| 15 # Otherwise, the tool will be installed outside any | |
| 16 # section. | |
| 17 # * tool_panel_section_label: Display label of a tool panel section where | |
| 18 # you want the tool to be installed. If it does not | |
| 19 # exist, this section will be created on the target | |
| 20 # Galaxy instance (note that this is different than | |
| 21 # when using the ID). | |
| 22 # Multi-word labels need to be placed in quotes. | |
| 23 # Each label will have a corresponding ID created; | |
| 24 # the ID will be an all lowercase version of the | |
| 25 # label, with multiple words joined with | |
| 26 # underscores (e.g., 'BED tools' -> 'bed_tools'). | |
| 27 # | |
| 28 # Tou can also specify the following optional keys to further define the | |
| 29 # installation properties: | |
| 30 # * tool_shed_url: the URL of the Tool Shed from where the tool should be | |
| 31 # installed. (default: https://toolshed.g2.bx.psu.edu) | |
| 32 # * revisions: a list of revisions of the tool, all of which will attempt to | |
| 33 # be installed. (default: latest) | |
| 34 # * install_tool_dependencies: True or False - whether to install tool | |
| 35 # dependencies or not. (default: True) | |
| 36 # * install_repository_dependencies: True or False - whether to install repo | |
| 37 # dependencies or not. (default: True) | |
| 38 | |
| 39 | |
| 40 # pip install ephemeris -U | |
| 41 # shed_install -t tools.yaml -a <galaxy admin API key> -g <galaxy instance> | |
| 42 # (the latter two can also be configure inside the yaml with following two lines) | |
| 43 #api_key: admin | |
| 44 #galaxy_instance: http://localhost:8080/ | |
| 45 | |
| 46 tools: | |
| 47 - name: mothur_align_check | |
| 48 install_resolver_dependencies: true | |
| 49 install_tool_dependencies: true | |
| 50 owner: iuc | |
| 51 tool_panel_section_label: "Mothur" | |
| 52 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 53 - name: mothur_align_seqs | |
| 54 install_resolver_dependencies: true | |
| 55 install_tool_dependencies: true | |
| 56 owner: iuc | |
| 57 tool_panel_section_label: "Mothur" | |
| 58 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 59 - name: mothur_amova | |
| 60 install_resolver_dependencies: true | |
| 61 install_tool_dependencies: true | |
| 62 owner: iuc | |
| 63 tool_panel_section_label: "Mothur" | |
| 64 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 65 - name: mothur_anosim | |
| 66 install_resolver_dependencies: true | |
| 67 install_tool_dependencies: true | |
| 68 owner: iuc | |
| 69 tool_panel_section_label: "Mothur" | |
| 70 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 71 - name: mothur_bin_seqs | |
| 72 install_resolver_dependencies: true | |
| 73 install_tool_dependencies: true | |
| 74 owner: iuc | |
| 75 tool_panel_section_label: "Mothur" | |
| 76 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 77 - name: mothur_chimera_bellerophon | |
| 78 install_resolver_dependencies: true | |
| 79 install_tool_dependencies: true | |
| 80 owner: iuc | |
| 81 tool_panel_section_label: "Mothur" | |
| 82 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 83 - name: mothur_chimera_ccode | |
| 84 install_resolver_dependencies: true | |
| 85 install_tool_dependencies: true | |
| 86 owner: iuc | |
| 87 tool_panel_section_label: "Mothur" | |
| 88 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 89 - name: mothur_chimera_check | |
| 90 install_resolver_dependencies: true | |
| 91 install_tool_dependencies: true | |
| 92 owner: iuc | |
| 93 tool_panel_section_label: "Mothur" | |
| 94 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 95 - name: mothur_chimera_perseus | |
| 96 install_resolver_dependencies: true | |
| 97 install_tool_dependencies: true | |
| 98 owner: iuc | |
| 99 tool_panel_section_label: "Mothur" | |
| 100 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 101 - name: mothur_chimera_pintail | |
| 102 install_resolver_dependencies: true | |
| 103 install_tool_dependencies: true | |
| 104 owner: iuc | |
| 105 tool_panel_section_label: "Mothur" | |
| 106 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 107 - name: mothur_chimera_slayer | |
| 108 install_resolver_dependencies: true | |
| 109 install_tool_dependencies: true | |
| 110 owner: iuc | |
| 111 tool_panel_section_label: "Mothur" | |
| 112 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 113 - name: mothur_chimera_uchime | |
| 114 install_resolver_dependencies: true | |
| 115 install_tool_dependencies: true | |
| 116 owner: iuc | |
| 117 tool_panel_section_label: "Mothur" | |
| 118 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 119 - name: mothur_chop_seqs | |
| 120 install_resolver_dependencies: true | |
| 121 install_tool_dependencies: true | |
| 122 owner: iuc | |
| 123 tool_panel_section_label: "Mothur" | |
| 124 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 125 - name: mothur_classify_otu | |
| 126 install_resolver_dependencies: true | |
| 127 install_tool_dependencies: true | |
| 128 owner: iuc | |
| 129 tool_panel_section_label: "Mothur" | |
| 130 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 131 - name: mothur_classify_rf | |
| 132 install_resolver_dependencies: true | |
| 133 install_tool_dependencies: true | |
| 134 owner: iuc | |
| 135 tool_panel_section_label: "Mothur" | |
| 136 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 137 - name: mothur_classify_seqs | |
| 138 install_resolver_dependencies: true | |
| 139 install_tool_dependencies: true | |
| 140 owner: iuc | |
| 141 tool_panel_section_label: "Mothur" | |
| 142 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 143 - name: mothur_classify_tree | |
| 144 install_resolver_dependencies: true | |
| 145 install_tool_dependencies: true | |
| 146 owner: iuc | |
| 147 tool_panel_section_label: "Mothur" | |
| 148 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 149 - name: mothur_clearcut | |
| 150 install_resolver_dependencies: true | |
| 151 install_tool_dependencies: true | |
| 152 owner: iuc | |
| 153 tool_panel_section_label: "Mothur" | |
| 154 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 155 - name: mothur_cluster_classic | |
| 156 install_resolver_dependencies: true | |
| 157 install_tool_dependencies: true | |
| 158 owner: iuc | |
| 159 tool_panel_section_label: "Mothur" | |
| 160 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 161 - name: mothur_cluster_fragments | |
| 162 install_resolver_dependencies: true | |
| 163 install_tool_dependencies: true | |
| 164 owner: iuc | |
| 165 tool_panel_section_label: "Mothur" | |
| 166 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 167 - name: mothur_cluster_split | |
| 168 install_resolver_dependencies: true | |
| 169 install_tool_dependencies: true | |
| 170 owner: iuc | |
| 171 tool_panel_section_label: "Mothur" | |
| 172 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 173 - name: mothur_cluster | |
| 174 install_resolver_dependencies: true | |
| 175 install_tool_dependencies: true | |
| 176 owner: iuc | |
| 177 tool_panel_section_label: "Mothur" | |
| 178 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 179 - name: mothur_collect_shared | |
| 180 install_resolver_dependencies: true | |
| 181 install_tool_dependencies: true | |
| 182 owner: iuc | |
| 183 tool_panel_section_label: "Mothur" | |
| 184 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 185 - name: mothur_collect_single | |
| 186 install_resolver_dependencies: true | |
| 187 install_tool_dependencies: true | |
| 188 owner: iuc | |
| 189 tool_panel_section_label: "Mothur" | |
| 190 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 191 - name: mothur_consensus_seqs | |
| 192 install_resolver_dependencies: true | |
| 193 install_tool_dependencies: true | |
| 194 owner: iuc | |
| 195 tool_panel_section_label: "Mothur" | |
| 196 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 197 - name: mothur_cooccurrence | |
| 198 install_resolver_dependencies: true | |
| 199 install_tool_dependencies: true | |
| 200 owner: iuc | |
| 201 tool_panel_section_label: "Mothur" | |
| 202 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 203 - name: mothur_corr_axes | |
| 204 install_resolver_dependencies: true | |
| 205 install_tool_dependencies: true | |
| 206 owner: iuc | |
| 207 tool_panel_section_label: "Mothur" | |
| 208 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 209 - name: mothur_count_groups | |
| 210 install_resolver_dependencies: true | |
| 211 install_tool_dependencies: true | |
| 212 owner: iuc | |
| 213 tool_panel_section_label: "Mothur" | |
| 214 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 215 - name: mothur_count_seqs | |
| 216 install_resolver_dependencies: true | |
| 217 install_tool_dependencies: true | |
| 218 owner: iuc | |
| 219 tool_panel_section_label: "Mothur" | |
| 220 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 221 - name: mothur_create_database | |
| 222 install_resolver_dependencies: true | |
| 223 install_tool_dependencies: true | |
| 224 owner: iuc | |
| 225 tool_panel_section_label: "Mothur" | |
| 226 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 227 - name: mothur_degap_seqs | |
| 228 install_resolver_dependencies: true | |
| 229 install_tool_dependencies: true | |
| 230 owner: iuc | |
| 231 tool_panel_section_label: "Mothur" | |
| 232 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 233 - name: mothur_deunique_seqs | |
| 234 install_resolver_dependencies: true | |
| 235 install_tool_dependencies: true | |
| 236 owner: iuc | |
| 237 tool_panel_section_label: "Mothur" | |
| 238 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 239 - name: mothur_deunique_tree | |
| 240 install_resolver_dependencies: true | |
| 241 install_tool_dependencies: true | |
| 242 owner: iuc | |
| 243 tool_panel_section_label: "Mothur" | |
| 244 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 245 - name: mothur_dist_seqs | |
| 246 install_resolver_dependencies: true | |
| 247 install_tool_dependencies: true | |
| 248 owner: iuc | |
| 249 tool_panel_section_label: "Mothur" | |
| 250 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 251 - name: mothur_dist_shared | |
| 252 install_resolver_dependencies: true | |
| 253 install_tool_dependencies: true | |
| 254 owner: iuc | |
| 255 tool_panel_section_label: "Mothur" | |
| 256 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 257 - name: mothur_fastq_info | |
| 258 install_resolver_dependencies: true | |
| 259 install_tool_dependencies: true | |
| 260 owner: iuc | |
| 261 tool_panel_section_label: "Mothur" | |
| 262 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 263 - name: mothur_filter_seqs | |
| 264 install_resolver_dependencies: true | |
| 265 install_tool_dependencies: true | |
| 266 owner: iuc | |
| 267 tool_panel_section_label: "Mothur" | |
| 268 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 269 - name: mothur_filter_shared | |
| 270 install_resolver_dependencies: true | |
| 271 install_tool_dependencies: true | |
| 272 owner: iuc | |
| 273 tool_panel_section_label: "Mothur" | |
| 274 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 275 - name: mothur_get_communitytype | |
| 276 install_resolver_dependencies: true | |
| 277 install_tool_dependencies: true | |
| 278 owner: iuc | |
| 279 tool_panel_section_label: "Mothur" | |
| 280 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 281 - name: mothur_get_coremicrobiome | |
| 282 install_resolver_dependencies: true | |
| 283 install_tool_dependencies: true | |
| 284 owner: iuc | |
| 285 tool_panel_section_label: "Mothur" | |
| 286 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 287 - name: mothur_get_dists | |
| 288 install_resolver_dependencies: true | |
| 289 install_tool_dependencies: true | |
| 290 owner: iuc | |
| 291 tool_panel_section_label: "Mothur" | |
| 292 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 293 - name: mothur_get_groups | |
| 294 install_resolver_dependencies: true | |
| 295 install_tool_dependencies: true | |
| 296 owner: iuc | |
| 297 tool_panel_section_label: "Mothur" | |
| 298 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 299 - name: mothur_get_group | |
| 300 install_resolver_dependencies: true | |
| 301 install_tool_dependencies: true | |
| 302 owner: iuc | |
| 303 tool_panel_section_label: "Mothur" | |
| 304 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 305 - name: mothur_get_label | |
| 306 install_resolver_dependencies: true | |
| 307 install_tool_dependencies: true | |
| 308 owner: iuc | |
| 309 tool_panel_section_label: "Mothur" | |
| 310 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 311 - name: mothur_get_lineage | |
| 312 install_resolver_dependencies: true | |
| 313 install_tool_dependencies: true | |
| 314 owner: iuc | |
| 315 tool_panel_section_label: "Mothur" | |
| 316 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 317 - name: mothur_get_mimarkspackage | |
| 318 install_resolver_dependencies: true | |
| 319 install_tool_dependencies: true | |
| 320 owner: iuc | |
| 321 tool_panel_section_label: "Mothur" | |
| 322 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 323 - name: mothur_get_otulabels | |
| 324 install_resolver_dependencies: true | |
| 325 install_tool_dependencies: true | |
| 326 owner: iuc | |
| 327 tool_panel_section_label: "Mothur" | |
| 328 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 329 - name: mothur_get_otulist | |
| 330 install_resolver_dependencies: true | |
| 331 install_tool_dependencies: true | |
| 332 owner: iuc | |
| 333 tool_panel_section_label: "Mothur" | |
| 334 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 335 - name: mothur_get_oturep | |
| 336 install_resolver_dependencies: true | |
| 337 install_tool_dependencies: true | |
| 338 owner: iuc | |
| 339 tool_panel_section_label: "Mothur" | |
| 340 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 341 - name: mothur_get_otus | |
| 342 install_resolver_dependencies: true | |
| 343 install_tool_dependencies: true | |
| 344 owner: iuc | |
| 345 tool_panel_section_label: "Mothur" | |
| 346 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 347 - name: mothur_get_rabund | |
| 348 install_resolver_dependencies: true | |
| 349 install_tool_dependencies: true | |
| 350 owner: iuc | |
| 351 tool_panel_section_label: "Mothur" | |
| 352 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 353 - name: mothur_get_relabund | |
| 354 install_resolver_dependencies: true | |
| 355 install_tool_dependencies: true | |
| 356 owner: iuc | |
| 357 tool_panel_section_label: "Mothur" | |
| 358 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 359 - name: mothur_get_sabund | |
| 360 install_resolver_dependencies: true | |
| 361 install_tool_dependencies: true | |
| 362 owner: iuc | |
| 363 tool_panel_section_label: "Mothur" | |
| 364 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 365 - name: mothur_get_seqs | |
| 366 install_resolver_dependencies: true | |
| 367 install_tool_dependencies: true | |
| 368 owner: iuc | |
| 369 tool_panel_section_label: "Mothur" | |
| 370 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 371 - name: mothur_get_sharedseqs | |
| 372 install_resolver_dependencies: true | |
| 373 install_tool_dependencies: true | |
| 374 owner: iuc | |
| 375 tool_panel_section_label: "Mothur" | |
| 376 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 377 - name: mothur_hcluster | |
| 378 install_resolver_dependencies: true | |
| 379 install_tool_dependencies: true | |
| 380 owner: iuc | |
| 381 tool_panel_section_label: "Mothur" | |
| 382 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 383 - name: mothur_heatmap_bin | |
| 384 install_resolver_dependencies: true | |
| 385 install_tool_dependencies: true | |
| 386 owner: iuc | |
| 387 tool_panel_section_label: "Mothur" | |
| 388 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 389 - name: mothur_heatmap_sim | |
| 390 install_resolver_dependencies: true | |
| 391 install_tool_dependencies: true | |
| 392 owner: iuc | |
| 393 tool_panel_section_label: "Mothur" | |
| 394 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 395 - name: mothur_homova | |
| 396 install_resolver_dependencies: true | |
| 397 install_tool_dependencies: true | |
| 398 owner: iuc | |
| 399 tool_panel_section_label: "Mothur" | |
| 400 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 401 - name: mothur_indicator | |
| 402 install_resolver_dependencies: true | |
| 403 install_tool_dependencies: true | |
| 404 owner: iuc | |
| 405 tool_panel_section_label: "Mothur" | |
| 406 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 407 - name: mothur_lefse | |
| 408 install_resolver_dependencies: true | |
| 409 install_tool_dependencies: true | |
| 410 owner: iuc | |
| 411 tool_panel_section_label: "Mothur" | |
| 412 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 413 - name: mothur_libshuff | |
| 414 install_resolver_dependencies: true | |
| 415 install_tool_dependencies: true | |
| 416 owner: iuc | |
| 417 tool_panel_section_label: "Mothur" | |
| 418 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 419 - name: mothur_list_otulabels | |
| 420 install_resolver_dependencies: true | |
| 421 install_tool_dependencies: true | |
| 422 owner: iuc | |
| 423 tool_panel_section_label: "Mothur" | |
| 424 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 425 - name: mothur_list_seqs | |
| 426 install_resolver_dependencies: true | |
| 427 install_tool_dependencies: true | |
| 428 owner: iuc | |
| 429 tool_panel_section_label: "Mothur" | |
| 430 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 431 - name: mothur_make_biom | |
| 432 install_resolver_dependencies: true | |
| 433 install_tool_dependencies: true | |
| 434 owner: iuc | |
| 435 tool_panel_section_label: "Mothur" | |
| 436 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 437 - name: mothur_make_contigs | |
| 438 install_resolver_dependencies: true | |
| 439 install_tool_dependencies: true | |
| 440 owner: iuc | |
| 441 tool_panel_section_label: "Mothur" | |
| 442 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 443 - name: mothur_make_design | |
| 444 install_resolver_dependencies: true | |
| 445 install_tool_dependencies: true | |
| 446 owner: iuc | |
| 447 tool_panel_section_label: "Mothur" | |
| 448 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 449 - name: mothur_make_fastq | |
| 450 install_resolver_dependencies: true | |
| 451 install_tool_dependencies: true | |
| 452 owner: iuc | |
| 453 tool_panel_section_label: "Mothur" | |
| 454 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 455 - name: mothur_make_group | |
| 456 install_resolver_dependencies: true | |
| 457 install_tool_dependencies: true | |
| 458 owner: iuc | |
| 459 tool_panel_section_label: "Mothur" | |
| 460 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 461 - name: mothur_make_lefse | |
| 462 install_resolver_dependencies: true | |
| 463 install_tool_dependencies: true | |
| 464 owner: iuc | |
| 465 tool_panel_section_label: "Mothur" | |
| 466 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 467 - name: mothur_make_lookup | |
| 468 install_resolver_dependencies: true | |
| 469 install_tool_dependencies: true | |
| 470 owner: iuc | |
| 471 tool_panel_section_label: "Mothur" | |
| 472 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 473 - name: mothur_make_shared | |
| 474 install_resolver_dependencies: true | |
| 475 install_tool_dependencies: true | |
| 476 owner: iuc | |
| 477 tool_panel_section_label: "Mothur" | |
| 478 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 479 - name: mothur_make_sra | |
| 480 install_resolver_dependencies: true | |
| 481 install_tool_dependencies: true | |
| 482 owner: iuc | |
| 483 tool_panel_section_label: "Mothur" | |
| 484 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 485 - name: mothur_mantel | |
| 486 install_resolver_dependencies: true | |
| 487 install_tool_dependencies: true | |
| 488 owner: iuc | |
| 489 tool_panel_section_label: "Mothur" | |
| 490 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 491 - name: mothur_merge_files | |
| 492 install_resolver_dependencies: true | |
| 493 install_tool_dependencies: true | |
| 494 owner: iuc | |
| 495 tool_panel_section_label: "Mothur" | |
| 496 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 497 - name: mothur_merge_groups | |
| 498 install_resolver_dependencies: true | |
| 499 install_tool_dependencies: true | |
| 500 owner: iuc | |
| 501 tool_panel_section_label: "Mothur" | |
| 502 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 503 - name: mothur_merge_sfffiles | |
| 504 install_resolver_dependencies: true | |
| 505 install_tool_dependencies: true | |
| 506 owner: iuc | |
| 507 tool_panel_section_label: "Mothur" | |
| 508 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 509 - name: mothur_merge_taxsummary | |
| 510 install_resolver_dependencies: true | |
| 511 install_tool_dependencies: true | |
| 512 owner: iuc | |
| 513 tool_panel_section_label: "Mothur" | |
| 514 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 515 - name: mothur_metastats | |
| 516 install_resolver_dependencies: true | |
| 517 install_tool_dependencies: true | |
| 518 owner: iuc | |
| 519 tool_panel_section_label: "Mothur" | |
| 520 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 521 - name: mothur_mimarks_attributes | |
| 522 install_resolver_dependencies: true | |
| 523 install_tool_dependencies: true | |
| 524 owner: iuc | |
| 525 tool_panel_section_label: "Mothur" | |
| 526 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 527 - name: mothur_nmds | |
| 528 install_resolver_dependencies: true | |
| 529 install_tool_dependencies: true | |
| 530 owner: iuc | |
| 531 tool_panel_section_label: "Mothur" | |
| 532 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 533 - name: mothur_normalize_shared | |
| 534 install_resolver_dependencies: true | |
| 535 install_tool_dependencies: true | |
| 536 owner: iuc | |
| 537 tool_panel_section_label: "Mothur" | |
| 538 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 539 - name: mothur_otu_association | |
| 540 install_resolver_dependencies: true | |
| 541 install_tool_dependencies: true | |
| 542 owner: iuc | |
| 543 tool_panel_section_label: "Mothur" | |
| 544 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 545 - name: mothur_otu_hierarchy | |
| 546 install_resolver_dependencies: true | |
| 547 install_tool_dependencies: true | |
| 548 owner: iuc | |
| 549 tool_panel_section_label: "Mothur" | |
| 550 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 551 - name: mothur_pairwise_seqs | |
| 552 install_resolver_dependencies: true | |
| 553 install_tool_dependencies: true | |
| 554 owner: iuc | |
| 555 tool_panel_section_label: "Mothur" | |
| 556 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 557 - name: mothur_parse_list | |
| 558 install_resolver_dependencies: true | |
| 559 install_tool_dependencies: true | |
| 560 owner: iuc | |
| 561 tool_panel_section_label: "Mothur" | |
| 562 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 563 - name: mothur_parsimony | |
| 564 install_resolver_dependencies: true | |
| 565 install_tool_dependencies: true | |
| 566 owner: iuc | |
| 567 tool_panel_section_label: "Mothur" | |
| 568 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 569 - name: mothur_pca | |
| 570 install_resolver_dependencies: true | |
| 571 install_tool_dependencies: true | |
| 572 owner: iuc | |
| 573 tool_panel_section_label: "Mothur" | |
| 574 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 575 - name: mothur_pcoa | |
| 576 install_resolver_dependencies: true | |
| 577 install_tool_dependencies: true | |
| 578 owner: iuc | |
| 579 tool_panel_section_label: "Mothur" | |
| 580 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 581 - name: mothur_pcr_seqs | |
| 582 install_resolver_dependencies: true | |
| 583 install_tool_dependencies: true | |
| 584 owner: iuc | |
| 585 tool_panel_section_label: "Mothur" | |
| 586 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 587 - name: mothur_phylo_diversity | |
| 588 install_resolver_dependencies: true | |
| 589 install_tool_dependencies: true | |
| 590 owner: iuc | |
| 591 tool_panel_section_label: "Mothur" | |
| 592 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 593 - name: mothur_phylotype | |
| 594 install_resolver_dependencies: true | |
| 595 install_tool_dependencies: true | |
| 596 owner: iuc | |
| 597 tool_panel_section_label: "Mothur" | |
| 598 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 599 - name: mothur_pre_cluster | |
| 600 install_resolver_dependencies: true | |
| 601 install_tool_dependencies: true | |
| 602 owner: iuc | |
| 603 tool_panel_section_label: "Mothur" | |
| 604 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 605 - name: mothur_primer_design | |
| 606 install_resolver_dependencies: true | |
| 607 install_tool_dependencies: true | |
| 608 owner: iuc | |
| 609 tool_panel_section_label: "Mothur" | |
| 610 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 611 - name: mothur_rarefaction_shared | |
| 612 install_resolver_dependencies: true | |
| 613 install_tool_dependencies: true | |
| 614 owner: iuc | |
| 615 tool_panel_section_label: "Mothur" | |
| 616 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 617 - name: mothur_rarefaction_single | |
| 618 install_resolver_dependencies: true | |
| 619 install_tool_dependencies: true | |
| 620 owner: iuc | |
| 621 tool_panel_section_label: "Mothur" | |
| 622 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 623 - name: mothur_remove_dists | |
| 624 install_resolver_dependencies: true | |
| 625 install_tool_dependencies: true | |
| 626 owner: iuc | |
| 627 tool_panel_section_label: "Mothur" | |
| 628 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 629 - name: mothur_remove_groups | |
| 630 install_resolver_dependencies: true | |
| 631 install_tool_dependencies: true | |
| 632 owner: iuc | |
| 633 tool_panel_section_label: "Mothur" | |
| 634 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 635 - name: mothur_remove_lineage | |
| 636 install_resolver_dependencies: true | |
| 637 install_tool_dependencies: true | |
| 638 owner: iuc | |
| 639 tool_panel_section_label: "Mothur" | |
| 640 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 641 - name: mothur_remove_otulabels | |
| 642 install_resolver_dependencies: true | |
| 643 install_tool_dependencies: true | |
| 644 owner: iuc | |
| 645 tool_panel_section_label: "Mothur" | |
| 646 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 647 - name: mothur_remove_otus | |
| 648 install_resolver_dependencies: true | |
| 649 install_tool_dependencies: true | |
| 650 owner: iuc | |
| 651 tool_panel_section_label: "Mothur" | |
| 652 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 653 - name: mothur_remove_rare | |
| 654 install_resolver_dependencies: true | |
| 655 install_tool_dependencies: true | |
| 656 owner: iuc | |
| 657 tool_panel_section_label: "Mothur" | |
| 658 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 659 - name: mothur_remove_seqs | |
| 660 install_resolver_dependencies: true | |
| 661 install_tool_dependencies: true | |
| 662 owner: iuc | |
| 663 tool_panel_section_label: "Mothur" | |
| 664 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 665 - name: mothur_reverse_seqs | |
| 666 install_resolver_dependencies: true | |
| 667 install_tool_dependencies: true | |
| 668 owner: iuc | |
| 669 tool_panel_section_label: "Mothur" | |
| 670 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 671 - name: mothur_screen_seqs | |
| 672 install_resolver_dependencies: true | |
| 673 install_tool_dependencies: true | |
| 674 owner: iuc | |
| 675 tool_panel_section_label: "Mothur" | |
| 676 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 677 - name: mothur_sens_spec | |
| 678 install_resolver_dependencies: true | |
| 679 install_tool_dependencies: true | |
| 680 owner: iuc | |
| 681 tool_panel_section_label: "Mothur" | |
| 682 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 683 - name: mothur_seq_error | |
| 684 install_resolver_dependencies: true | |
| 685 install_tool_dependencies: true | |
| 686 owner: iuc | |
| 687 tool_panel_section_label: "Mothur" | |
| 688 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 689 - name: mothur_sffinfo | |
| 690 install_resolver_dependencies: true | |
| 691 install_tool_dependencies: true | |
| 692 owner: iuc | |
| 693 tool_panel_section_label: "Mothur" | |
| 694 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 695 - name: mothur_shhh_flows | |
| 696 install_resolver_dependencies: true | |
| 697 install_tool_dependencies: true | |
| 698 owner: iuc | |
| 699 tool_panel_section_label: "Mothur" | |
| 700 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 701 - name: mothur_shhh_seqs | |
| 702 install_resolver_dependencies: true | |
| 703 install_tool_dependencies: true | |
| 704 owner: iuc | |
| 705 tool_panel_section_label: "Mothur" | |
| 706 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 707 - name: mothur_sort_seqs | |
| 708 install_resolver_dependencies: true | |
| 709 install_tool_dependencies: true | |
| 710 owner: iuc | |
| 711 tool_panel_section_label: "Mothur" | |
| 712 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 713 - name: mothur_split_abund | |
| 714 install_resolver_dependencies: true | |
| 715 install_tool_dependencies: true | |
| 716 owner: iuc | |
| 717 tool_panel_section_label: "Mothur" | |
| 718 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 719 - name: mothur_split_groups | |
| 720 install_resolver_dependencies: true | |
| 721 install_tool_dependencies: true | |
| 722 owner: iuc | |
| 723 tool_panel_section_label: "Mothur" | |
| 724 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 725 - name: mothur_sub_sample | |
| 726 install_resolver_dependencies: true | |
| 727 install_tool_dependencies: true | |
| 728 owner: iuc | |
| 729 tool_panel_section_label: "Mothur" | |
| 730 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 731 - name: mothur_summary_qual | |
| 732 install_resolver_dependencies: true | |
| 733 install_tool_dependencies: true | |
| 734 owner: iuc | |
| 735 tool_panel_section_label: "Mothur" | |
| 736 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 737 - name: mothur_summary_seqs | |
| 738 install_resolver_dependencies: true | |
| 739 install_tool_dependencies: true | |
| 740 owner: iuc | |
| 741 tool_panel_section_label: "Mothur" | |
| 742 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 743 - name: mothur_summary_shared | |
| 744 install_resolver_dependencies: true | |
| 745 install_tool_dependencies: true | |
| 746 owner: iuc | |
| 747 tool_panel_section_label: "Mothur" | |
| 748 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 749 - name: mothur_summary_single | |
| 750 install_resolver_dependencies: true | |
| 751 install_tool_dependencies: true | |
| 752 owner: iuc | |
| 753 tool_panel_section_label: "Mothur" | |
| 754 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 755 - name: mothur_summary_tax | |
| 756 install_resolver_dependencies: true | |
| 757 install_tool_dependencies: true | |
| 758 owner: iuc | |
| 759 tool_panel_section_label: "Mothur" | |
| 760 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 761 - name: mothur_tree_shared | |
| 762 install_resolver_dependencies: true | |
| 763 install_tool_dependencies: true | |
| 764 owner: iuc | |
| 765 tool_panel_section_label: "Mothur" | |
| 766 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 767 - name: mothur_trim_flows | |
| 768 install_resolver_dependencies: true | |
| 769 install_tool_dependencies: true | |
| 770 owner: iuc | |
| 771 tool_panel_section_label: "Mothur" | |
| 772 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 773 - name: mothur_trim_seqs | |
| 774 install_resolver_dependencies: true | |
| 775 install_tool_dependencies: true | |
| 776 owner: iuc | |
| 777 tool_panel_section_label: "Mothur" | |
| 778 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 779 - name: mothur_unifrac_unweighted | |
| 780 install_resolver_dependencies: true | |
| 781 install_tool_dependencies: true | |
| 782 owner: iuc | |
| 783 tool_panel_section_label: "Mothur" | |
| 784 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 785 - name: mothur_unifrac_weighted | |
| 786 install_resolver_dependencies: true | |
| 787 install_tool_dependencies: true | |
| 788 owner: iuc | |
| 789 tool_panel_section_label: "Mothur" | |
| 790 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 791 - name: mothur_unique_seqs | |
| 792 install_resolver_dependencies: true | |
| 793 install_tool_dependencies: true | |
| 794 owner: iuc | |
| 795 tool_panel_section_label: "Mothur" | |
| 796 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
| 797 - name: mothur_venn | |
| 798 install_resolver_dependencies: true | |
| 799 install_tool_dependencies: true | |
| 800 owner: iuc | |
| 801 tool_panel_section_label: "Mothur" | |
| 802 tool_shed_url: https://toolshed.g2.bx.psu.edu |