Mercurial > repos > iuc > mothur_make_design
diff make.design.xml @ 2:afa78efd7056 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
| author | iuc |
|---|---|
| date | Tue, 20 Mar 2018 22:23:04 -0400 |
| parents | 7f5f942a6862 |
| children | 7a6b209a7bd7 |
line wrap: on
line diff
--- a/make.design.xml Tue Sep 05 16:52:48 2017 -0400 +++ b/make.design.xml Tue Mar 20 22:23:04 2018 -0400 @@ -7,16 +7,16 @@ <expand macro="stdio"/> <expand macro="version_command"/> <command><![CDATA[ - @SHELL_OPTIONS@ +@SHELL_OPTIONS@ - #for $grouping in $groupings: - #set grp_str = $grouping.groups.__str__ - #if grp_str: - #for $grp in grp_str.split(','): - echo -e "$grp\t$grouping.name" >> $design; - #end for - #end if +#for $grouping in $groupings: + #set grp_str = $grouping.groups.__str__ + #if grp_str: + #for $grp in grp_str.split(','): + echo -e "$grp\t$grouping.name" >> $design; #end for + #end if +#end for ]]></command> <inputs> <param name="source" type="data" format="mothur.shared,mothur.groups" label="Source containing groups"/> @@ -28,6 +28,7 @@ </options> </param> </repeat> + <expand macro="param-savelog"/> </inputs> <outputs> <data name="design" format="mothur.design" label="${tool.name} on ${on_string}: design"/> @@ -46,8 +47,7 @@ <output name="design" file="toymothur.design" ftype="mothur.design"/> </test> </tests> - <help> -<![CDATA[ + <help><![CDATA[ @MOTHUR_OVERVIEW@ @@ -59,7 +59,7 @@ .. _merge.groups: https://www.mothur.org/wiki/Merge.groups .. _indicator: https://www.mothur.org/wiki/Indicator .. _metastats: https://www.mothur.org/wiki/Metastats -]]> - </help> + + ]]></help> <expand macro="citations"/> </tool>