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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 7599ef16dc8b83ee49236ed5bb229260c969b0ab
author iuc
date Mon, 17 Jun 2024 11:52:11 +0000
parents 0c303113990d
children
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---
# This is a sample file to be used as a reference for populating a list of
# tools that you wish to install into Galaxy from a Tool Shed via the
# `install_tool_shed_tools.py` script.
#
# For each tool you want to install, you must provide the following keys:
#  * name: this is is the name of the tool to install
#  * owner: owner of the Tool Shed repository from where the tools is being
#           installed
# Further, you need to provide **one** of the following two keys:
#  * tool_panel_section_id: ID of the tool panel section where you want the
#                           tool to be installed. The section ID can be found
#                           in Galaxy's `shed_tool_conf.xml` config file. Note
#                           that the specified section must exist in this file.
#                           Otherwise, the tool will be installed outside any
#                           section.
#  * tool_panel_section_label: Display label of a tool panel section where
#                              you want the tool to be installed. If it does not
#                              exist, this section will be created on the target
#                              Galaxy instance (note that this is different than
#                              when using the ID).
#                              Multi-word labels need to be placed in quotes.
#                              Each label will have a corresponding ID created;
#                              the ID will be an all lowercase version of the
#                              label, with multiple words joined with
#                              underscores (e.g., 'BED tools' -> 'bed_tools').
#
# Tou can also specify the following optional keys to further define the
# installation properties:
#  * tool_shed_url: the URL of the Tool Shed from where the tool should be
#                   installed. (default: https://toolshed.g2.bx.psu.edu)
#  * revisions: a list of revisions of the tool, all of which will attempt to
#               be installed. (default: latest)
#  * install_tool_dependencies: True or False - whether to install tool
#                               dependencies or not. (default: True)
#  * install_repository_dependencies: True or False - whether to install repo
#                               dependencies or not. (default: True)


# pip install ephemeris -U
# shed_install -t tools.yaml -a <galaxy admin API key> -g <galaxy instance>
# (the latter two can also be configure inside the yaml with following two lines)
#api_key: admin
#galaxy_instance: http://localhost:8080/

tools:
- name: mothur_align_check
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_align_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_amova
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_anosim
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_bin_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_chimera_bellerophon
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_chimera_ccode
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_chimera_check
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_chimera_perseus
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_chimera_pintail
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_chimera_slayer
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_chimera_uchime
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_chop_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_classify_otu
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_classify_rf
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_classify_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_classify_tree
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_clearcut
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_cluster_classic
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_cluster_fragments
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_cluster_split
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_cluster
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_collect_shared
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_collect_single
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_consensus_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_cooccurrence
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_corr_axes
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_count_groups
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_count_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_create_database
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_degap_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_deunique_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_deunique_tree
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_dist_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_dist_shared
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_fastq_info
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_filter_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_filter_shared
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_communitytype
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_coremicrobiome
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_dists
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_groups
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_group
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_label
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_lineage
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_mimarkspackage
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_otulabels
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_otulist
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_oturep
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_otus
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_rabund
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_relabund
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_sabund
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_get_sharedseqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_hcluster
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_heatmap_bin
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_heatmap_sim
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_homova
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_indicator
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_lefse
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_libshuff
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_list_otulabels
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_list_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_make_biom
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_make_contigs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_make_design
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_make_fastq
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_make_group
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_make_lefse
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_make_lookup
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_make_shared
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_make_sra
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_mantel
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_merge_files
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_merge_groups
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_merge_sfffiles
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_merge_taxsummary
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_metastats
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_mimarks_attributes
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_nmds
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_normalize_shared
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_otu_association
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_otu_hierarchy
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_pairwise_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_parse_list
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_parsimony
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_pca
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_pcoa
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_pcr_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_phylo_diversity
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_phylotype
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_pre_cluster
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_primer_design
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_rarefaction_shared
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_rarefaction_single
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_remove_dists
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_remove_groups
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_remove_lineage
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_remove_otulabels
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_remove_otus
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_remove_rare
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_remove_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_reverse_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_screen_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_sens_spec
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_seq_error
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_sffinfo
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_shhh_flows
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_shhh_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_sort_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_split_abund
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_split_groups
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_sub_sample
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_summary_qual
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_summary_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_summary_shared
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_summary_single
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_summary_tax
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_tree_shared
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_trim_flows
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_trim_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_unifrac_unweighted
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_unifrac_weighted
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_unique_seqs
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu
- name: mothur_venn
  install_resolver_dependencies: true
  install_tool_dependencies: true
  owner: iuc
  tool_panel_section_label: "Mothur"
  tool_shed_url: https://toolshed.g2.bx.psu.edu