# HG changeset patch
# User iuc
# Date 1604614629 0
# Node ID 5106f3ce22a39624cc5695c64190cbd020867c0c
# Parent  8354a02a83e1cecc2bd75054843d01e633a8625a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d"

diff -r 8354a02a83e1 -r 5106f3ce22a3 macros.xml
--- a/macros.xml	Mon Dec 02 06:06:49 2019 -0500
+++ b/macros.xml	Thu Nov 05 22:17:09 2020 +0000
@@ -15,7 +15,7 @@
             <exit_code range="1:" level="fatal"/>
         </stdio>
     </xml>
-    <token name="@SHELL_OPTIONS@">set -o pipefail;</token>
+    <token name="@SHELL_OPTIONS@">set -o pipefail; export TERM=vt100; </token>
 
 
     <!-- Input parameters -->
diff -r 8354a02a83e1 -r 5106f3ce22a3 mimarks.attributes.xml
--- a/mimarks.attributes.xml	Mon Dec 02 06:06:49 2019 -0500
+++ b/mimarks.attributes.xml	Thu Nov 05 22:17:09 2020 +0000
@@ -47,7 +47,6 @@
 
 The mimarks.attributes_ command reads `BioSample Attributes`_ xml and generates source for get.mimarkspackage_ command.
 
-.. _mimarks.attributes: https://www.mothur.org/w/index.php?search=mimarks.attributes
 .. _BioSample Attributes: https://www.ncbi.nlm.nih.gov/biosample/docs/attributes/
 .. _get.mimarkspackage: https://www.mothur.org/wiki/Get.mimarkspackage