Mercurial > repos > iuc > mothur_otu_association

annotate test-data/biosample.xml @ 1:435b52e38889 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 721531d2e9fd1e208a3fba8cfbe5dcd572599ca2
author iuc
date Tue, 05 Sep 2017 17:18:19 -0400
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4b4ca5a8e3e2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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1 <BioSampleAttributes>
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2 <Attribute>
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3 <Name>EDTA inhibitor tested</Name>
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4 <HarmonizedName>edta_inhibitor_tested</HarmonizedName>
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5 <Description>Was carbapenemase activity tested in the presence of EDTA? If carbapenemase activity was tested in the presence of EDTA, the response should be "yes", otherwise "no”.</Description>
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6 <Format>['', 'yes', 'no', 'missing', 'not applicable', 'not collected']</Format>
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7 <Synonym>edta inhibitor tested</Synonym>
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8 <Package use="mandatory">Beta-lactamase.1.0</Package>
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9 </Attribute>
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10 <Attribute>
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11 <Name>FAO classification</Name>
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12 <HarmonizedName>fao_class</HarmonizedName>
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13 <Description>soil classification from the FAO World Reference Database for Soil Resources</Description>
4b4ca5a8e3e2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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14 <Format>{term}</Format>
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15 <Synonym>fao class</Synonym>
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16 <Synonym>fao classification</Synonym>
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17 <Synonym>soil taxonomic/fao classification</Synonym>
4b4ca5a8e3e2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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18 <Package use="optional" group_name="Soil">MIGS.ba.soil.4.0</Package>
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19 <Package use="optional" group_name="Soil">MIGS.eu.soil.4.0</Package>
4b4ca5a8e3e2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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20 <Package use="optional" group_name="Soil">MIGS.vi.soil.4.0</Package>
4b4ca5a8e3e2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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21 <Package use="optional" group_name="Soil">MIMARKS.specimen.soil.4.0</Package>
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22 <Package use="optional" group_name="Soil">MIMARKS.survey.soil.4.0</Package>
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23 <Package use="optional" group_name="Soil">MIMS.me.soil.4.0</Package>
4b4ca5a8e3e2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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24 </Attribute>
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25 <Attribute>
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26 <Name>HIV status</Name>
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27 <HarmonizedName>hiv_stat</HarmonizedName>
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28 <Description>HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]</Description>
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29 <Format>{boolean};{boolean}</Format>
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30 <Synonym>hiv stat</Synonym>
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31 <Synonym>hiv status</Synonym>
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32 </Attribute>
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33 </BioSampleAttributes>