Mercurial > repos > iuc > mothur_rarefaction_shared
comparison rarefaction.shared.xml @ 5:419266a5e29e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 7f7605c2c8d8e92f3369dfdc290e5d8d06fa409a
author | iuc |
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date | Fri, 03 Aug 2018 14:34:26 -0400 |
parents | 7c3d6982fcef |
children | 64c70653e86d |
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236 The rarefaction.shared_ command generates inter-sample rarefaction curves using a re-sampling without replacement approach. The traditional way that ecologists use rarefaction is not to randomize the sampling order within a sample, rather between samples. For instance, if we wanted to know the number of OTUs in the human colon, we might sample from various sites within the colon, and sequence a bunch of 16S rRNA genes. By determining the number of OTUs in each sample and comparing the composition of those samples it is possible to determine how well you have sampled the biodiversity within the individual. For calc parameter choices see: https://www.mothur.org/wiki/Calculators | 236 The rarefaction.shared_ command generates inter-sample rarefaction curves using a re-sampling without replacement approach. The traditional way that ecologists use rarefaction is not to randomize the sampling order within a sample, rather between samples. For instance, if we wanted to know the number of OTUs in the human colon, we might sample from various sites within the colon, and sequence a bunch of 16S rRNA genes. By determining the number of OTUs in each sample and comparing the composition of those samples it is possible to determine how well you have sampled the biodiversity within the individual. For calc parameter choices see: https://www.mothur.org/wiki/Calculators |
237 | 237 |
238 .. _rarefaction.shared: https://www.mothur.org/wiki/Rarefaction.shared | 238 .. _rarefaction.shared: https://www.mothur.org/wiki/Rarefaction.shared |
239 | 239 |
240 ]]></help> | 240 ]]></help> |
241 <expand macro="citations"/> | 241 <expand macro="citations"> |
242 <citation type="bibtex"><![CDATA[ | |
243 @book{magurran2013measuring, | |
244 title={Measuring biological diversity}, | |
245 author={Magurran, Anne E}, | |
246 year={2013}, | |
247 publisher={John Wiley \& Sons} | |
248 } | |
249 ]]></citation> | |
250 </expand> | |
242 </tool> | 251 </tool> |