Mercurial > repos > iuc > mothur_rename_seqs

annotate tool-data/mothur_aligndb.loc.sample @ 1:e4653c26d369 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 283d5933cd945b7815b3da2ce45baa60d73e9746
author iuc
date Fri, 06 Apr 2018 04:03:59 -0400
parents 1ac1d3e02088
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
1 #This is a sample file distributed with Galaxy that enables tools
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
2 #to use a directory of metagenomics files.
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
3 #file has this format (white space characters are TAB characters):
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
4 #
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
5 # Reference Alignments: http://www.mothur.org/wiki/Alignment_database
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
6 #
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
7 #<dbname> <file_base>
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
8 #
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
9 #greengenes /project/db/galaxy/mothur/core_set_aligned.imputed.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
10 #silva archaea /project/db/galaxy/mothur/Silva.archaea/silva.archaea.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
11 #silva bacteria /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
12 #silva eukarya /project/db/galaxy/mothur/silva.eukarya.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
13 #silva archaea nogap /project/db/galaxy/mothur/Silva.archaea/nogap.archaea.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
14 #silva bacteria nogap /project/db/galaxy/mothur/silva.bacteria/nogap.bacteria.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
15 #silva eukarya nogap /project/db/galaxy/mothur/nogap.eukarya.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
16 #FungiLSU_train_1400bp_8506_mod.fasta /project/db/galaxy/mothur/RDP/FungiLSU_train_1400bp_8506_mod.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
17 #trainset6_032010.rdp.fasta /project/db/galaxy/mothur/RDP/trainset6_032010.rdp.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
18 #trainset7_112011.pds.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.pds.fasta
1ac1d3e02088 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
iuc
parents:
diff changeset
19 #trainset7_112011.rdp.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.rdp.fasta