Mercurial > repos > iuc > mothur_screen_seqs

comparison screen.seqs.xml @ 2:8743aecd26a9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ca8dc573528ab7c5290bc6ca029cb989f4755db6
author iuc
date Fri, 08 Sep 2017 14:47:32 -0400
parents 125a6ae65887
children 6202ff80199f
comparison
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1:0e2e03dbdaf9 2:8743aecd26a9
96 <param name="qfile_in" type="data" format="qual" optional="true" label="qfile - Sequence Quality file to screen"/> 96 <param name="qfile_in" type="data" format="qual" optional="true" label="qfile - Sequence Quality file to screen"/>
97 <param name="names_in" type="data" format="mothur.names" optional="true" label="name - Sequence Names to screen"/> 97 <param name="names_in" type="data" format="mothur.names" optional="true" label="name - Sequence Names to screen"/>
98 <param name="groups_in" type="data" format="mothur.groups" optional="true" label="group - Groups to screen"/> 98 <param name="groups_in" type="data" format="mothur.groups" optional="true" label="group - Groups to screen"/>
99 <param name="alignreport_in" type="data" format="mothur.align.report" optional="true" label="alignreport - Align Report to screen"/> 99 <param name="alignreport_in" type="data" format="mothur.align.report" optional="true" label="alignreport - Align Report to screen"/>
100 <param name="summary" type="data" format="mothur.summary" optional="true" label="summary file - as created by summary.seqs" help="saves processing time when screening with parameters in the summary file"/> 100 <param name="summary" type="data" format="mothur.summary" optional="true" label="summary file - as created by summary.seqs" help="saves processing time when screening with parameters in the summary file"/>
101 <param name="contigsreport" type="data" format="contigs.report" optional="true" label="contigsreport - Contigs Report to screen with" help="this file is created by the make.contigs command. If you provide the contigs report file you can screen your sequences using the following parameters: minoverlap, ostart, oend and mismatches"/> 101 <param name="contigsreport" type="data" format="tabular" optional="true" label="contigsreport - Contigs Report to screen with" help="this file is created by the make.contigs command. If you provide the contigs report file you can screen your sequences using the following parameters: minoverlap, ostart, oend and mismatches"/>
102 <param name="taxonomy_in" type="data" format="taxonomy" optional="true" label="taxonomy - Taxonomy to screen"/> 102 <param name="taxonomy_in" type="data" format="taxonomy" optional="true" label="taxonomy - Taxonomy to screen"/>
103 <param name="count_in" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="generated by count.seqs"/> 103 <param name="count_in" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="generated by count.seqs"/>
104 </inputs> 104 </inputs>
105 <outputs> 105 <outputs>
106 <expand macro="logfile-output"/> 106 <expand macro="logfile-output"/>