Mercurial > repos > iuc > mothur_sub_sample

comparison sub.sample.xml @ 5:2986f7b01e74 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 68e35d5f24a9219e5583ede7d38a78fa976f7dbb
author iuc
date Sat, 14 Jul 2018 23:11:05 -0400
parents 46d13e8c60ba
children
comparison
equal deleted inserted replaced
4:88d66f3b47e0 5:2986f7b01e74
172 <filter>input['format'] == 'fasta' and input['name_in']</filter> 172 <filter>input['format'] == 'fasta' and input['name_in']</filter>
173 </data> 173 </data>
174 <data name="group_out" format="mothur.groups" from_work_dir="input_use_group_group_in*.subsample.*" label="${tool.name} on ${on_string}: subsample.groups"> 174 <data name="group_out" format="mothur.groups" from_work_dir="input_use_group_group_in*.subsample.*" label="${tool.name} on ${on_string}: subsample.groups">
175 <filter>(input['format'] == 'fasta' or input['format'] == 'list') and input['use_group']['to_filter'] == 'yes'</filter> 175 <filter>(input['format'] == 'fasta' or input['format'] == 'list') and input['use_group']['to_filter'] == 'yes'</filter>
176 </data> 176 </data>
177 <data name="count_out" format="mothur.count_table" from_work_dir="count.subsample.*" label="${tool.name} on ${on_string}: subsample.count">
178 <filter>count</filter>
179 </data>
177 </outputs> 180 </outputs>
178 <tests> 181 <tests>
179 <test><!-- test with list --> 182 <test><!-- test with list -->
180 <param name="format" value="list"/> 183 <param name="format" value="list"/>
181 <param name="otu" value="amazon.an.list" ftype="mothur.list"/> 184 <param name="otu" value="amazon.an.list" ftype="mothur.list"/>
290 </assert_contents> 293 </assert_contents>
291 </output> 294 </output>
292 <param name="savelog" value="true"/> 295 <param name="savelog" value="true"/>
293 <expand macro="logfile-test"/> 296 <expand macro="logfile-test"/>
294 </test> 297 </test>
298 <test><!-- test with count file -->
299 <param name="format" value="fasta"/>
300 <param name="otu" value="amazon.unique.fasta" ftype="fasta"/>
301 <param name="count" value="amazon.count_table" ftype="mothur.count_table"/>
302 <output name="count_out" ftype="mothur.count_table">
303 <assert_contents>
304 <expand macro="test-count-format"/>
305 <has_line_matching expression="^U\d+\t\d$"/>
306 </assert_contents>
307 </output>
308 <param name="savelog" value="true"/>
309 <expand macro="logfile-test"/>
310 </test>
295 </tests> 311 </tests>
296 <help><![CDATA[ 312 <help><![CDATA[
297 313
298 @MOTHUR_OVERVIEW@ 314 @MOTHUR_OVERVIEW@
299 315