Mercurial > repos > iuc > mothur_summary_single
comparison summary.single.xml @ 1:9ea778acd657 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit e2075caee2ecdc6aed15a356e5328c5ca09cfb13
author | iuc |
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date | Fri, 09 Jun 2017 06:53:23 -0400 |
parents | b0c7113ee948 |
children | 3aeaa4ca1e48 |
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0:b0c7113ee948 | 1:9ea778acd657 |
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48 )' | 48 )' |
49 | sed 's/ //g' ## mothur trips over whitespace | 49 | sed 's/ //g' ## mothur trips over whitespace |
50 | mothur | 50 | mothur |
51 | tee mothur.out.log | 51 | tee mothur.out.log |
52 #if $subsample.use == 'yes' and not ($otu.extension == 'mothur.shared' and not $groupmode): | 52 #if $subsample.use == 'yes' and not ($otu.extension == 'mothur.shared' and not $groupmode): |
53 && mv otu.ave-std.summary otu.ave-std | 53 && mv otu.*ave-std.summary otu.ave-std |
54 #end if | 54 #end if |
55 ]]></command> | 55 ]]></command> |
56 <inputs> | 56 <inputs> |
57 <param name="otu" type="data" format="mothur.list,mothur.rabund,mothur.sabund,mothur.shared" label="list,rabund,sabund,shared - OTU List"/> | 57 <param name="otu" type="data" format="mothur.list,mothur.rabund,mothur.sabund,mothur.shared" label="list,rabund,sabund,shared - OTU List"/> |
58 <param name="label" type="select" label="label - OTU Labels" multiple="true"> | 58 <param name="label" type="select" label="label - OTU Labels" multiple="true"> |