Mercurial > repos > iuc > multiqc

annotate test-data/genome_results.txt @ 18:c19b16e5729c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 263b1803fbf2622dbeb283b1d965690a5dc24ec9"
author iuc
date Thu, 19 Nov 2020 21:54:37 +0000
parents bf675f34b056
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
16
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
1 BamQC report
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
2 -----------------------------------
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
3
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
4 >>>>>>> Input
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
5
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
6 bam file = x_bam
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
7 outfile = results/genome_results.txt
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
8
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
9
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
10 >>>>>>> Reference
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
11
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
12 number of bases = 1,817,261 bp
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
13 number of contigs = 1
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
14
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
15
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
16 >>>>>>> Globals
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
17
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
18 number of windows = 400
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
19
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
20 number of reads = 1,248,774
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
21 number of mapped reads = 1,242,183 (99.47%)
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
22 number of supplementary alignments = 3,386 (0.27%)
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
23 number of secondary alignments = 0
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
24
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
25 number of mapped paired reads (first in pair) = 623,192
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
26 number of mapped paired reads (second in pair) = 618,991
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
27 number of mapped paired reads (both in pair) = 1,237,764
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
28 number of mapped paired reads (singletons) = 4,419
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
29 number of overlapping read pairs = 463,596
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
30
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
31 number of mapped bases = 366,875,582 bp
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
32 number of sequenced bases = 366,823,893 bp
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
33 number of aligned bases = 0 bp
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
34 number of duplicated reads (estimated) = 673,527
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
35 duplication rate = 47.01%
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
36
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
37
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
38 >>>>>>> Insert size
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
39
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
40 mean insert size = 1,097.678
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
41 std insert size = 27,365.2401
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
42 median insert size = 524
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
43
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
44
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
45 >>>>>>> Mapping quality
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
46
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
47 mean mapping quality = 58.4552
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
48
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
49
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
50 >>>>>>> ACTG content
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
51
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
52 number of A's = 109,576,306 bp (29.87%)
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
53 number of C's = 73,524,910 bp (20.04%)
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
54 number of T's = 111,308,231 bp (30.34%)
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
55 number of G's = 72,414,446 bp (19.74%)
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
56 number of N's = 0 bp (0%)
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
57
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
58 GC percentage = 39.78%
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
59
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
60
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
61 >>>>>>> Mismatches and indels
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
62
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
63 general error rate = 0.0098
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
64 number of mismatches = 3,560,959
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
65 number of insertions = 7,229
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
66 mapped reads with insertion percentage = 0.56%
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
67 number of deletions = 14,669
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
68 mapped reads with deletion percentage = 1.15%
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
69 homopolymer indels = 46.92%
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
70
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
71
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
72 >>>>>>> Coverage
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
73
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
74 mean coverageData = 201.8838X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
75 std coverageData = 112.2733X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
76 paired-end adapted mean coverage = 177.4988X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
77
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
78 There is a 99.81% of reference with a coverageData >= 1X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
79 There is a 99.77% of reference with a coverageData >= 2X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
80 There is a 99.74% of reference with a coverageData >= 3X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
81 There is a 99.7% of reference with a coverageData >= 4X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
82 There is a 99.66% of reference with a coverageData >= 5X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
83 There is a 99.6% of reference with a coverageData >= 6X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
84 There is a 99.53% of reference with a coverageData >= 7X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
85 There is a 99.41% of reference with a coverageData >= 8X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
86 There is a 99.3% of reference with a coverageData >= 9X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
87 There is a 99.21% of reference with a coverageData >= 10X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
88 There is a 99.11% of reference with a coverageData >= 11X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
89 There is a 98.99% of reference with a coverageData >= 12X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
90 There is a 98.87% of reference with a coverageData >= 13X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
91 There is a 98.76% of reference with a coverageData >= 14X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
92 There is a 98.63% of reference with a coverageData >= 15X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
93 There is a 98.5% of reference with a coverageData >= 16X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
94 There is a 98.35% of reference with a coverageData >= 17X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
95 There is a 98.16% of reference with a coverageData >= 18X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
96 There is a 97.97% of reference with a coverageData >= 19X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
97 There is a 97.79% of reference with a coverageData >= 20X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
98 There is a 97.59% of reference with a coverageData >= 21X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
99 There is a 97.37% of reference with a coverageData >= 22X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
100 There is a 97.16% of reference with a coverageData >= 23X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
101 There is a 96.95% of reference with a coverageData >= 24X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
102 There is a 96.71% of reference with a coverageData >= 25X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
103 There is a 96.48% of reference with a coverageData >= 26X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
104 There is a 96.24% of reference with a coverageData >= 27X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
105 There is a 95.99% of reference with a coverageData >= 28X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
106 There is a 95.73% of reference with a coverageData >= 29X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
107 There is a 95.49% of reference with a coverageData >= 30X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
108 There is a 95.23% of reference with a coverageData >= 31X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
109 There is a 94.99% of reference with a coverageData >= 32X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
110 There is a 94.75% of reference with a coverageData >= 33X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
111 There is a 94.51% of reference with a coverageData >= 34X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
112 There is a 94.27% of reference with a coverageData >= 35X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
113 There is a 94.01% of reference with a coverageData >= 36X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
114 There is a 93.8% of reference with a coverageData >= 37X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
115 There is a 93.55% of reference with a coverageData >= 38X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
116 There is a 93.31% of reference with a coverageData >= 39X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
117 There is a 93.04% of reference with a coverageData >= 40X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
118 There is a 92.77% of reference with a coverageData >= 41X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
119 There is a 92.52% of reference with a coverageData >= 42X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
120 There is a 92.27% of reference with a coverageData >= 43X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
121 There is a 91.99% of reference with a coverageData >= 44X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
122 There is a 91.72% of reference with a coverageData >= 45X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
123 There is a 91.44% of reference with a coverageData >= 46X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
124 There is a 91.17% of reference with a coverageData >= 47X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
125 There is a 90.9% of reference with a coverageData >= 48X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
126 There is a 90.64% of reference with a coverageData >= 49X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
127 There is a 90.4% of reference with a coverageData >= 50X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
128 There is a 90.15% of reference with a coverageData >= 51X
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
129
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
130
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
131 >>>>>>> Coverage per contig
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
132
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
133 NZ_CP031250.1 1817261 366875582 201.88381415768015 112.27329056357358
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
134
bf675f34b056 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
iuc
parents:
diff changeset
135