Mercurial > repos > iuc > multiqc

annotate test-data/post_aligner_soft_stats.tabular @ 18:c19b16e5729c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 263b1803fbf2622dbeb283b1d965690a5dc24ec9"
author iuc
date Thu, 19 Nov 2020 21:54:37 +0000
parents 1c2db0054039
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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12
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
1 Sample QUAST_mqc-generalstats-quast-N50 QUAST_mqc-generalstats-quast-Total_length featureCounts_mqc-generalstats-featurecounts-percent_assigned featureCounts_mqc-generalstats-featurecounts-Assigned Picard_mqc-generalstats-picard-PCT_PF_READS_ALIGNED Prokka_mqc-generalstats-prokka-organism Prokka_mqc-generalstats-prokka-contigs Prokka_mqc-generalstats-prokka-bases Prokka_mqc-generalstats-prokka-CDS Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_records Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_SNPs Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_indels Bcftools Stats_mqc-generalstats-bcftools_stats-tstv Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_MNPs Bamtools_mqc-generalstats-bamtools-duplicates_pct Bamtools_mqc-generalstats-bamtools-mapped_reads_pct Picard_mqc-generalstats-picard-PERCENT_DUPLICATION Picard_mqc-generalstats-picard-summed_median Picard_mqc-generalstats-picard-summed_mean GATK VariantEval_mqc-generalstats-gatk_varianteval-known_titv GATK VariantEval_mqc-generalstats-gatk_varianteval-novel_titv HTSeq Count_mqc-generalstats-htseq_count-percent_assigned HTSeq Count_mqc-generalstats-htseq_count-assigned Picard_mqc-generalstats-picard-PCT_RIBOSOMAL_BASES Picard_mqc-generalstats-picard-PCT_MRNA_BASES Samtools Flagstat_mqc-generalstats-samtools_flagstat-mapped_passed Samtools Stats_mqc-generalstats-samtools_stats-error_rate Samtools Stats_mqc-generalstats-samtools_stats-non_primary_alignments Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped_percent Samtools Stats_mqc-generalstats-samtools_stats-reads_properly_paired_percent Samtools Stats_mqc-generalstats-samtools_stats-reads_MQ0_percent Samtools Stats_mqc-generalstats-samtools_stats-raw_total_sequences SnpEff_mqc-generalstats-snpeff-Change_rate SnpEff_mqc-generalstats-snpeff-Ts_Tv_ratio SnpEff_mqc-generalstats-snpeff-Number_of_variants_before_filter Samblaster_mqc-generalstats-samblaster-pct_dups
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
2 14892_1#15 115136.0 18435361.0
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
3 70: TopHat on data 1, data 4, and data 3: accepted_hits 70.82267755353567 321797
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
4 75: TopHat on data 1, data 6, and data 5: accepted_hits 69.58585803304067 445012
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
5 80: TopHat on data 1, data 8, and data 7: accepted_hits 71.76957768385707 394981
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
6 85: TopHat on data 1, data 10, and data 9: accepted_hits 72.02454351337069 437485
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
7 90: TopHat on data 1, data 12, and data 11: accepted_hits 71.33130826437625 388170
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
8 95: TopHat on data 1, data 14, and data 13: accepted_hits 70.72517103678439 453929
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
9 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
10 Sample1 Helicobacter pylori 30 1629978 1548
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
11 Sample2 Escherichia coli 52 162997532523 1548
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
12 Test1 5522770.0 4474244.0 902934.0 1.97 72330.0
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
13 bamtools_txt 0.0 93.125
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
14 dataset_114 0.005582
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
15 dataset_197 176 271.809759
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
16 gatk_varianteval_txt 0.0 2.2
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
17 htseq_txt 0.0 0
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
18 picard_CollectRnaSeqMetrics_bam 79.62310000000001
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
19 samtools_flagstat_txt 20689039
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
20 samtools_stats_txt 0.004248509 12111.0 641821.0 100.0 99.03477760933345 0.010906467691147531 641821.0
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
21 snpeff_csv 3190.0 0.0 972155.0
1c2db0054039 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
iuc
parents: 8
diff changeset
22 virtual-normal 1.28