Mercurial > repos > iuc > multiqc

comparison test-data/post_aligner_soft_stats.tabular @ 12:1c2db0054039 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
author iuc
date Wed, 08 Aug 2018 08:49:39 -0400
parents e0f4a651c6b9
children
comparison
equal deleted inserted replaced
11:f0ec41881020 12:1c2db0054039
1 Sample QUAST_mqc-generalstats-N50 QUAST_mqc-generalstats-Total_length featureCounts_mqc-generalstats-percent_assigned featureCounts_mqc-generalstats-Assigned Picard_mqc-generalstats-PCT_PF_READS_ALIGNED Prokka_mqc-generalstats-contigs Prokka_mqc-generalstats-organism Prokka_mqc-generalstats-bases Prokka_mqc-generalstats-CDS Bcftools Stats_mqc-generalstats-tstv Bcftools Stats_mqc-generalstats-number_of_MNPs Bcftools Stats_mqc-generalstats-number_of_indels Bcftools Stats_mqc-generalstats-number_of_SNPs Bcftools Stats_mqc-generalstats-number_of_records Bamtools_mqc-generalstats-duplicates_pct Bamtools_mqc-generalstats-mapped_reads_pct Picard_mqc-generalstats-PERCENT_DUPLICATION Picard_mqc-generalstats-summed_median Picard_mqc-generalstats-summed_mean GATK VariantEval_mqc-generalstats-known_titv GATK VariantEval_mqc-generalstats-novel_titv HTSeq Count_mqc-generalstats-percent_assigned HTSeq Count_mqc-generalstats-assigned Picard_mqc-generalstats-PCT_MRNA_BASES Picard_mqc-generalstats-PCT_RIBOSOMAL_BASES Samtools Flagstat_mqc-generalstats-mapped_passed Samtools Stats_mqc-generalstats-raw_total_sequences Samtools Stats_mqc-generalstats-non_primary_alignments Samtools Stats_mqc-generalstats-reads_mapped Samtools Stats_mqc-generalstats-error_rate Samtools Stats_mqc-generalstats-reads_mapped_percent SnpEff_mqc-generalstats-Ts_Tv_ratio SnpEff_mqc-generalstats-Number_of_variants_before_filter SnpEff_mqc-generalstats-Change_rate Samblaster_mqc-generalstats-pct_dups 1 Sample QUAST_mqc-generalstats-quast-N50 QUAST_mqc-generalstats-quast-Total_length featureCounts_mqc-generalstats-featurecounts-percent_assigned featureCounts_mqc-generalstats-featurecounts-Assigned Picard_mqc-generalstats-picard-PCT_PF_READS_ALIGNED Prokka_mqc-generalstats-prokka-organism Prokka_mqc-generalstats-prokka-contigs Prokka_mqc-generalstats-prokka-bases Prokka_mqc-generalstats-prokka-CDS Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_records Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_SNPs Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_indels Bcftools Stats_mqc-generalstats-bcftools_stats-tstv Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_MNPs Bamtools_mqc-generalstats-bamtools-duplicates_pct Bamtools_mqc-generalstats-bamtools-mapped_reads_pct Picard_mqc-generalstats-picard-PERCENT_DUPLICATION Picard_mqc-generalstats-picard-summed_median Picard_mqc-generalstats-picard-summed_mean GATK VariantEval_mqc-generalstats-gatk_varianteval-known_titv GATK VariantEval_mqc-generalstats-gatk_varianteval-novel_titv HTSeq Count_mqc-generalstats-htseq_count-percent_assigned HTSeq Count_mqc-generalstats-htseq_count-assigned Picard_mqc-generalstats-picard-PCT_RIBOSOMAL_BASES Picard_mqc-generalstats-picard-PCT_MRNA_BASES Samtools Flagstat_mqc-generalstats-samtools_flagstat-mapped_passed Samtools Stats_mqc-generalstats-samtools_stats-error_rate Samtools Stats_mqc-generalstats-samtools_stats-non_primary_alignments Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped_percent Samtools Stats_mqc-generalstats-samtools_stats-reads_properly_paired_percent Samtools Stats_mqc-generalstats-samtools_stats-reads_MQ0_percent Samtools Stats_mqc-generalstats-samtools_stats-raw_total_sequences SnpEff_mqc-generalstats-snpeff-Change_rate SnpEff_mqc-generalstats-snpeff-Ts_Tv_ratio SnpEff_mqc-generalstats-snpeff-Number_of_variants_before_filter Samblaster_mqc-generalstats-samblaster-pct_dups
2 14892_1#15 115136.0 18435361.0 2 14892_1#15 115136.0 18435361.0
3 70: TopHat on data 1, data 4, and data 3: accepted_hits 70.82267755353567 321797 3 70: TopHat on data 1, data 4, and data 3: accepted_hits 70.82267755353567 321797
4 75: TopHat on data 1, data 6, and data 5: accepted_hits 69.58585803304067 445012 4 75: TopHat on data 1, data 6, and data 5: accepted_hits 69.58585803304067 445012
5 80: TopHat on data 1, data 8, and data 7: accepted_hits 71.76957768385707 394981 5 80: TopHat on data 1, data 8, and data 7: accepted_hits 71.76957768385707 394981
6 85: TopHat on data 1, data 10, and data 9: accepted_hits 72.02454351337069 437485 6 85: TopHat on data 1, data 10, and data 9: accepted_hits 72.02454351337069 437485
7 90: TopHat on data 1, data 12, and data 11: accepted_hits 71.33130826437625 388170 7 90: TopHat on data 1, data 12, and data 11: accepted_hits 71.33130826437625 388170
8 95: TopHat on data 1, data 14, and data 13: accepted_hits 70.72517103678439 453929 8 95: TopHat on data 1, data 14, and data 13: accepted_hits 70.72517103678439 453929
9 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085 9 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085
10 Sample1 30 Helicobacter pylori 1629978 1548 10 Sample1 Helicobacter pylori 30 1629978 1548
11 Sample2 52 Escherichia coli 162997532523 1548 11 Sample2 Escherichia coli 52 162997532523 1548
12 Test1 1.97 72330.0 902934.0 4474244.0 5522770.0 12 Test1 5522770.0 4474244.0 902934.0 1.97 72330.0
13 bamtools 0.0 93.125 13 bamtools_txt 0.0 93.125
14 dataset_114 0.005582 14 dataset_114 0.005582
15 dataset_197 176 271.809759 15 dataset_197 176 271.809759
16 gatk_varianteval 0.0 2.2 16 gatk_varianteval_txt 0.0 2.2
17 htseq 0.0 0 17 htseq_txt 0.0 0
18 picard_CollectRnaSeqMetrics_bam 79.62310000000001 18 picard_CollectRnaSeqMetrics_bam 79.62310000000001
19 samtools_flagstat 20689039 19 samtools_flagstat_txt 20689039
20 samtools_stats 641821.0 12111.0 641821.0 0.004248509 100.0 20 samtools_stats_txt 0.004248509 12111.0 641821.0 100.0 99.03477760933345 0.010906467691147531 641821.0
21 snpeff 0.0 972155.0 3190.0 21 snpeff_csv 3190.0 0.0 972155.0
22 virtual-normal 1.28 22 virtual-normal 1.28