Mercurial > repos > iuc > multiqc

comparison test-data/picard_collectGcBias.txt @ 0:3bad335ccea9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
author iuc
date Tue, 24 Oct 2017 06:29:59 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:3bad335ccea9
1 ## htsjdk.samtools.metrics.StringHeader
2 # picard.analysis.CollectGcBiasMetrics CHART_OUTPUT=/omaha-beach/cloud_26/files/000/dataset_195.dat SUMMARY_OUTPUT=/omaha-beach/cloud_26/files/000/dataset_193.dat WINDOW_SIZE=100 MINIMUM_GENOME_FRACTION=5.0E-5 IS_BISULFITE_SEQUENCED=true INPUT=/omaha-beach/cloud_26/files/000/dataset_114.dat OUTPUT=/omaha-beach/cloud_26/files/000/dataset_194.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa METRIC_ACCUMULATION_LEVEL=[ALL_READS] STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
3 ## htsjdk.samtools.metrics.StringHeader
4 # Started on: Mon May 23 09:32:30 UTC 2016
5
6 ## METRICS CLASS picard.analysis.GcBiasDetailMetrics
7 ACCUMULATION_LEVEL GC WINDOWS READ_STARTS MEAN_BASE_QUALITY NORMALIZED_COVERAGE ERROR_BAR_WIDTH SAMPLE LIBRARY READ_GROUP
8 All Reads 0 0 0 0 0 0
9 All Reads 1 0 0 0 0 0
10 All Reads 2 0 0 0 0 0
11 All Reads 3 10 0 0 0 0
12 All Reads 4 7 0 0 0 0
13 All Reads 5 6 0 0 0 0
14 All Reads 6 4 0 0 0 0
15 All Reads 7 9 0 0 0 0
16 All Reads 8 22 0 0 0 0
17 All Reads 9 15 0 0 0 0
18 All Reads 10 20 0 0 0 0
19 All Reads 11 18 0 0 0 0
20 All Reads 12 101 0 0 0 0
21 All Reads 13 118 0 0 0 0
22 All Reads 14 137 1 20 0.110575 0.110575
23 All Reads 15 243 4 19 0.249362 0.124681
24 All Reads 16 366 10 21 0.4139 0.130887
25 All Reads 17 468 9 24 0.291322 0.097107
26 All Reads 18 689 25 24 0.549664 0.109933
27 All Reads 19 1087 40 26 0.557451 0.088141
28 All Reads 20 2152 95 25 0.668741 0.068611
29 All Reads 21 3279 127 23 0.586731 0.052064
30 All Reads 22 5106 178 23 0.528099 0.039583
31 All Reads 23 7817 319 23 0.618197 0.034612
32 All Reads 24 11933 630 24 0.799774 0.031864
33 All Reads 25 17449 759 25 0.658943 0.023918
34 All Reads 26 25272 1414 26 0.847591 0.02254
35 All Reads 27 34926 1806 25 0.783331 0.018433
36 All Reads 28 48489 2889 26 0.90257 0.016792
37 All Reads 29 64950 4285 26 0.99942 0.015268
38 All Reads 30 84452 5453 26 0.978142 0.013246
39 All Reads 31 107535 6476 26 0.912291 0.011337
40 All Reads 32 134982 7953 26 0.892548 0.010008
41 All Reads 33 165941 9475 26 0.864972 0.008886
42 All Reads 34 199087 11437 26 0.870253 0.008137
43 All Reads 35 233144 12856 26 0.83533 0.007367
44 All Reads 36 266049 14918 26 0.849426 0.006955
45 All Reads 37 298999 17019 26 0.862265 0.00661
46 All Reads 38 327958 20230 26 0.934446 0.00657
47 All Reads 39 350801 22684 26 0.97957 0.006504
48 All Reads 40 369841 23670 26 0.969527 0.006302
49 All Reads 41 383262 25527 26 1.008975 0.006315
50 All Reads 42 392470 26131 25 1.008617 0.006239
51 All Reads 43 395234 25603 25 0.981326 0.006133
52 All Reads 44 392428 26425 25 1.020074 0.006275
53 All Reads 45 386569 25213 25 0.988039 0.006222
54 All Reads 46 376763 25980 25 1.044594 0.006481
55 All Reads 47 363422 24801 25 1.033795 0.006564
56 All Reads 48 348339 24838 25 1.080167 0.006854
57 All Reads 49 331960 24992 24 1.140491 0.007214
58 All Reads 50 315781 23793 24 1.141405 0.0074
59 All Reads 51 297249 22601 24 1.151818 0.007662
60 All Reads 52 278159 19653 24 1.070317 0.007635
61 All Reads 53 263713 19395 24 1.114127 0.008
62 All Reads 54 247317 19047 24 1.166673 0.008453
63 All Reads 55 230663 17922 23 1.177023 0.008792
64 All Reads 56 215458 16244 23 1.142107 0.008961
65 All Reads 57 198515 14904 23 1.137329 0.009316
66 All Reads 58 180718 13720 23 1.150083 0.009819
67 All Reads 59 165914 11940 23 1.090179 0.009977
68 All Reads 60 152561 10775 23 1.069917 0.010307
69 All Reads 61 138857 9746 23 1.063249 0.01077
70 All Reads 62 125804 9067 22 1.091807 0.011466
71 All Reads 63 112222 7148 22 0.964902 0.011413
72 All Reads 64 99218 6056 23 0.924638 0.011882
73 All Reads 65 85414 5612 24 0.995326 0.013286
74 All Reads 66 72999 4286 23 0.88943 0.013586
75 All Reads 67 61396 3631 23 0.895907 0.014868
76 All Reads 68 52109 3341 22 0.971271 0.016804
77 All Reads 69 45121 2735 21 0.918238 0.017558
78 All Reads 70 38925 1675 21 0.651873 0.015928
79 All Reads 71 32225 1053 22 0.495008 0.015254
80 All Reads 72 27537 721 22 0.396639 0.014772
81 All Reads 73 23481 483 22 0.311607 0.014179
82 All Reads 74 20300 423 22 0.315661 0.015348
83 All Reads 75 17785 245 22 0.208684 0.013332
84 All Reads 76 15846 236 22 0.225615 0.014686
85 All Reads 77 13683 230 22 0.254638 0.01679
86 All Reads 78 11733 217 23 0.280174 0.019019
87 All Reads 79 10547 188 22 0.270026 0.019694
88 All Reads 80 9314 151 22 0.245594 0.019986
89 All Reads 81 7659 149 23 0.294707 0.024143
90 All Reads 82 5813 56 25 0.145937 0.019502
91 All Reads 83 4687 46 23 0.148676 0.021921
92 All Reads 84 3505 18 23 0.077797 0.018337
93 All Reads 85 2385 8 23 0.050813 0.017965
94 All Reads 86 1424 5 21 0.053191 0.023788
95 All Reads 87 859 3 20 0.052906 0.030545
96 All Reads 88 529 0 0 0 0
97 All Reads 89 411 0 0 0 0
98 All Reads 90 348 0 0 0 0
99 All Reads 91 138 0 0 0 0
100 All Reads 92 40 0 0 0 0
101 All Reads 93 7 0 0 0 0
102 All Reads 94 7 0 0 0 0
103 All Reads 95 12 0 0 0 0
104 All Reads 96 17 0 0 0 0
105 All Reads 97 8 0 0 0 0
106 All Reads 98 9 0 0 0 0
107 All Reads 99 5 0 0 0 0
108 All Reads 100 30 0 0 0 0
109
110