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comparison porechop_plugin.xml @ 27:7591bce96601 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
author iuc
date Tue, 18 Feb 2025 23:18:25 +0000
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children 31c42a2c02d3
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26:d2aaac19f42f 27:7591bce96601
1 <macros>
2 <token name="@PORECHOP_COMMAND@"><![CDATA[
3 #set $pattern = "Looking for known adapter sets"
4 @LN_FILES@
5 ]]></token>
6 <xml name="porechop_form">
7 <param name="input" type="data" format="txt" multiple="true" label="Output of Porechop" help="It should contain 'Looking for known adapter sets'"/>
8 </xml>
9 <xml name="porechop_test">
10 <test expect_num_outputs="3">
11 <repeat name="results">
12 <conditional name="software_cond">
13 <param name="software" value="porechop"/>
14 <param name="input" value="porechop.log"/>
15 </conditional>
16 </repeat>
17 <param name="title" value="Title of the report"/>
18 <param name="comment" value="Commment for the report"/>
19 <param name="flat" value="true"/>
20 <param name="export" value="true"/>
21 <output name="html_report">
22 <assert_contents>
23 <has_text text="Title of the report"/>
24 <has_text text="Commment for the report"/>
25 <has_text text="Porechop"/>
26 <has_text text="Reads adapter-trimmed read end"/>
27 <has_text text="Middle split reads"/>
28 </assert_contents>
29 </output>
30 <output name="stats">
31 <assert_contents>
32 <has_text text="porechop-Input_Reads"/>
33 <has_text text="porechop-Start_Trimmed"/>
34 <has_text text="porechop-Middle_Split_Percent"/>
35 <has_text text="44.44444444444444"/>
36 <has_text text="4e-06"/>
37 <has_n_lines n="2"/>
38 <has_n_columns n="8"/>
39 </assert_contents>
40 </output>
41 <output_collection name="plots" type="list" count="3"/>
42 </test>
43 </xml>
44 </macros>