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comparison snippy_plugin.xml @ 27:7591bce96601 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
author iuc
date Tue, 18 Feb 2025 23:18:25 +0000
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26:d2aaac19f42f 27:7591bce96601
1 <macros>
2 <token name="@SNIPPY_COMMAND@"><![CDATA[
3 #set $pattern = "snippy|ID\tLENGTH\tALIGNED\tUNALIGNED\tVARIANT\tHET\tMASKED\tLOWCOV"
4 @LN_FILES@
5 ]]></token>
6 <xml name="snippy_form">
7 <param name="input" type="data" format="txt" multiple="true" label="Output summary of Snippy" help="It should contain 'snippy' or 'ID\tLENGTH\tALIGNED\tUNALIGNED\tVARIANT\tHET\tMASKED\tLOWCOV'"/>
8 </xml>
9 <xml name="snippy_test">
10 <test expect_num_outputs="3">
11 <repeat name="results">
12 <conditional name="software_cond">
13 <param name="software" value="snippy"/>
14 <param name="input" value="snippy.txt"/>
15 </conditional>
16 </repeat>
17 <param name="title" value="Title of the report"/>
18 <param name="comment" value="Commment for the report"/>
19 <param name="flat" value="true"/>
20 <param name="export" value="true"/>
21 <output name="html_report">
22 <assert_contents>
23 <has_text text="Title of the report"/>
24 <has_text text="Commment for the report"/>
25 <has_text text="Snippy-Core Alignment Statistics"/>
26 </assert_contents>
27 </output>
28 <output name="stats">
29 <assert_contents>
30 <has_text text="snippy-Percent_Het"/>
31 <has_text text="snippy-HET"/>
32 <has_text text="700"/>
33 <has_text text="7.285714285714286"/>
34 <has_text text="a"/>
35 <has_n_lines n="5"/>
36 <has_n_columns n="6"/>
37 </assert_contents>
38 </output>
39 <output_collection name="plots" type="list" count="0"/>
40 </test>
41 </xml>
42 </macros>