Mercurial > repos > iuc > multiqc
comparison deeptools_plugin.xml @ 24:f7e2f1eb3a16 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
| author | iuc |
|---|---|
| date | Mon, 02 Sep 2024 14:22:54 +0000 |
| parents | |
| children |
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| 23:abfd8a6544d7 | 24:f7e2f1eb3a16 |
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| 1 <macros> | |
| 2 <token name="@DEEPTOOLS_COMMAND@"><![CDATA[ | |
| 3 #for $j, $repeat2 in enumerate( $repeat.software_cond.output ) | |
| 4 #if str($repeat2.type) == "bamPEFragmentSize" | |
| 5 #set $pattern = "Frag." | |
| 6 @LN_2_FILES@ | |
| 7 #elif str($repeat2.type) == "estimateReadFiltering" | |
| 8 #set $pattern = "Internally-determined Duplicate" | |
| 9 @LN_2_FILES@ | |
| 10 #elif str($repeat2.type) == "plotCoverageStdout" | |
| 11 #set $pattern = "sample" | |
| 12 @LN_2_FILES@ | |
| 13 #elif str($repeat2.type) == "plotCoverageOutRawCounts" | |
| 14 #set $pattern = "#plotCoverage --outRawCounts" | |
| 15 @LN_2_FILES@ | |
| 16 #elif str($repeat2.type) == "plotEnrichment" | |
| 17 #set $pattern = "featureReadCount" | |
| 18 @LN_2_FILES@ | |
| 19 #elif str($repeat2.type) == "plotFingerprintOutRawCounts" | |
| 20 #set $pattern = "#plotFingerprint --outRawCounts" | |
| 21 @LN_2_FILES@ | |
| 22 #end if | |
| 23 #end for | |
| 24 ]]></token> | |
| 25 <xml name="deeptools_form"> | |
| 26 <repeat name="output" title="deepTools output" min="1"> | |
| 27 <param name="type" type="select" label="deepTool used to generate the output?"> | |
| 28 <option value="bamPEFragmentSize">bamPEFragmentSize</option> | |
| 29 <option value="estimateReadFiltering">estimateReadFiltering</option> | |
| 30 <option value="plotCoverageStdout">plotCoverageStdout</option> | |
| 31 <option value="plotCoverageOutRawCounts">plotCoverageOutRawCounts</option> | |
| 32 <option value="plotEnrichment">plotEnrichment</option> | |
| 33 <option value="plotFingerprintOutRawCounts">plotFingerprintOutRawCounts</option> | |
| 34 <option value="plotFingerprintOutQualityMetrics">plotFingerprintOutQualityMetrics</option> | |
| 35 </param> | |
| 36 <param name="input" type="data" format="txt" label="Bismark output" multiple="true"/> | |
| 37 </repeat> | |
| 38 </xml> | |
| 39 </macros> |