Mercurial > repos > iuc > multiqc
comparison pycoqc_plugin.xml @ 24:f7e2f1eb3a16 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
author | iuc |
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date | Mon, 02 Sep 2024 14:22:54 +0000 |
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23:abfd8a6544d7 | 24:f7e2f1eb3a16 |
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1 <macros> | |
2 <token name="@PYCOQC_COMMAND@"><![CDATA[ | |
3 #set $pattern = "\"pycoqc\":" | |
4 @LN_FILES@ | |
5 ]]></token> | |
6 <xml name="pycoqc_form"> | |
7 <param name="input" type="data" format="txt,json" multiple="true" label="Output of PycoQC"/> | |
8 </xml> | |
9 <!-- add here your test files and tests, the more stringent the better --> | |
10 <xml name="pycoqc_test"> | |
11 <test expect_num_outputs="2"> | |
12 <repeat name="results"> | |
13 <conditional name="software_cond"> | |
14 <param name="software" value="pycoqc"/> | |
15 <param name="input" value="pycoqc.json"/> | |
16 </conditional> | |
17 </repeat> | |
18 <param name="title" value="Title of the report"/> | |
19 <param name="comment" value="Commment for the report"/> | |
20 <!-- <param name="flat" value="true"/> --> | |
21 <output name="html_report"> | |
22 <assert_contents> | |
23 <has_text text="Title of the report"/> | |
24 <has_text text="Commment for the report"/> | |
25 <has_text text="General Statistics"/> | |
26 <has_text text="pycoqc_count_plot"/> | |
27 <has_text text="pycoqc_read_len_plot"/> | |
28 <has_text text="pycoqc_read_qual_plot"/> | |
29 </assert_contents> | |
30 </output> | |
31 <output name="stats" ftype="tabular"> | |
32 <assert_contents> | |
33 <has_text text="pycoQC_mqc_generalstats_pycoqc_passed_median_read_length"/> | |
34 <has_text text="pycoqc_json"/> | |
35 </assert_contents> | |
36 </output> | |
37 </test> | |
38 </xml> | |
39 </macros> |