Mercurial > repos > iuc > multiqc
comparison bcftools_plugin.xml @ 24:f7e2f1eb3a16 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
author | iuc |
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date | Mon, 02 Sep 2024 14:22:54 +0000 |
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23:abfd8a6544d7 | 24:f7e2f1eb3a16 |
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1 <macros> | |
2 <token name="@BCFTOOLS_COMMAND@"><![CDATA[ | |
3 #set $pattern = "This file was produced by bcftools stats" | |
4 @LN_FILES@ | |
5 ]]></token> | |
6 <xml name="bcftools_form"> | |
7 <param name="input" type="data" format="txt" multiple="true" label="Output of BCFtools" help="It should contain 'This file was produced by bcftools stats'"/> | |
8 </xml> | |
9 <!-- add here your test files and tests, the more stringent the better --> | |
10 <xml name="bcftools_test"> | |
11 <test expect_num_outputs="3"> | |
12 <repeat name="results"> | |
13 <conditional name="software_cond"> | |
14 <param name="software" value="bcftools"/> | |
15 <param name="input" value="bcftools.txt"/> | |
16 </conditional> | |
17 </repeat> | |
18 <param name="title" value="Title of the report"/> | |
19 <param name="comment" value="Commment for the report"/> | |
20 <param name="flat" value="true"/> | |
21 <param name="export" value="true"/> | |
22 <output name="html_report"> | |
23 <assert_contents> | |
24 <has_text text="Title of the report"/> | |
25 <has_text text="Commment for the report"/> | |
26 <has_text text="bcftools_stats_indel-lengths"/> | |
27 </assert_contents> | |
28 </output> | |
29 <output name="stats"> | |
30 <assert_contents> | |
31 <has_text text="Stats_mqc_generalstats_bcftools_stats_number_of_records"/> | |
32 <has_text text="Stats_mqc_generalstats_bcftools_stats_number_of_SNPs"/> | |
33 <has_text text="Test1"/> | |
34 <has_text text="72330"/> | |
35 <has_n_lines n="2"/> | |
36 <has_n_columns n="8"/> | |
37 </assert_contents> | |
38 </output> | |
39 <output_collection name="plots" type="list" count="0"/> | |
40 </test> | |
41 </xml> | |
42 </macros> |