Mercurial > repos > iuc > multiqc
comparison bamtools_plugin.xml @ 24:f7e2f1eb3a16 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
| author | iuc |
|---|---|
| date | Mon, 02 Sep 2024 14:22:54 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 23:abfd8a6544d7 | 24:f7e2f1eb3a16 |
|---|---|
| 1 <macros> | |
| 2 <token name="@BAMTOOLS_COMMAND@"><![CDATA[ | |
| 3 #set $pattern = "Stats for BAM file(s)" | |
| 4 @LN_FILES@ | |
| 5 ]]></token> | |
| 6 <xml name="bamtools_form"> | |
| 7 <param name="input" type="data" format="txt" multiple="true" label="Output of BAMtools" help="It should contain 'This file was produced by bcftools stats'"/> | |
| 8 </xml> | |
| 9 <xml name="bamtools_test"> | |
| 10 <test expect_num_outputs="3"> | |
| 11 <repeat name="results"> | |
| 12 <conditional name="software_cond"> | |
| 13 <param name="software" value="bamtools"/> | |
| 14 <param name="input" value="bamtools.txt"/> | |
| 15 </conditional> | |
| 16 </repeat> | |
| 17 <param name="title" value="Title of the report"/> | |
| 18 <param name="comment" value="Commment for the report"/> | |
| 19 <param name="flat" value="true"/> | |
| 20 <param name="export" value="true"/> | |
| 21 <output name="html_report"> | |
| 22 <assert_contents> | |
| 23 <has_text text="Title of the report"/> | |
| 24 <has_text text="Commment for the report"/> | |
| 25 <has_text text="bamtools-stats"/> | |
| 26 </assert_contents> | |
| 27 </output> | |
| 28 <output name="stats"> | |
| 29 <assert_contents> | |
| 30 <has_text text="bamtools_txt"/> | |
| 31 <has_text text="Bamtools"/> | |
| 32 <has_n_lines n="2"/> | |
| 33 <has_n_columns n="3"/> | |
| 34 </assert_contents> | |
| 35 </output> | |
| 36 <output_collection name="plots" type="list" count="1"/> | |
| 37 </test> | |
| 38 </xml> | |
| 39 </macros> |