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comparison macros.xml @ 23:abfd8a6544d7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author iuc
date Sat, 10 Dec 2022 11:22:18 +0000
parents 9a913cdee30e
children
comparison
equal deleted inserted replaced
22:9a913cdee30e 23:abfd8a6544d7
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">1.11</token> 2 <token name="@TOOL_VERSION@">1.11</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">1</token>
4 <xml name="bio_tools"> 4 <xml name="bio_tools">
5 <xrefs> 5 <xrefs>
6 <xref type="bio.tools">multiqc</xref> 6 <xref type="bio.tools">multiqc</xref>
7 </xrefs> 7 </xrefs>
8 </xml> 8 </xml>
216 #elif str($repeat2.type.type) == "read_gc" 216 #elif str($repeat2.type.type) == "read_gc"
217 #for $k, $file in enumerate($repeat2.type.input) 217 #for $k, $file in enumerate($repeat2.type.input)
218 #set file_path = os.path.join($repeat_dir, 'file_' + str($k) + '.GC.xls') 218 #set file_path = os.path.join($repeat_dir, 'file_' + str($k) + '.GC.xls')
219 ln -s '$file' '$file_path' && 219 ln -s '$file' '$file_path' &&
220 #end for 220 #end for
221 #elif str($repeat2.type.type) == "junction_annotation" 221 #elif str($repeat2.type.type) == "junction_saturation"
222 #set $pattern = "Group Total_bases Tag_count Tags/Kb" 222 #for $k, $file in enumerate($repeat2.type.input)
223 @LN_3_FILES@ 223 #set file_path = os.path.join($repeat_dir, 'file_' + str($k) + '.junctionSaturation_plot.r')
224 ln -s '${file}' '$file_path' &&
225 #end for
224 #elif str($repeat2.type.type) == "read_distribution" 226 #elif str($repeat2.type.type) == "read_distribution"
225 #set $pattern = "Group Total_bases Tag_count Tags/Kb" 227 #set $pattern = "Group Total_bases Tag_count Tags/Kb"
226 @LN_3_FILES@ 228 @LN_3_FILES@
227 #elif str($repeat2.type.type) == "read_duplication_pos" 229 #elif str($repeat2.type.type) == "read_duplication_pos"
228 #for $k, $file in enumerate($repeat2.type.input) 230 #for $k, $file in enumerate($repeat2.type.input)