Mercurial > repos > iuc > multiqc
diff test-data/hicexplorer2.log @ 6:01237d721a9f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
| author | iuc |
|---|---|
| date | Sat, 23 Dec 2017 15:57:55 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicexplorer2.log Sat Dec 23 15:57:55 2017 -0500 @@ -0,0 +1,29 @@ + +File small_test_rf_matrix.h5 +Pairs considered 99983 +Min rest. site distance 152 +Max rest. site distance 1500 + +# count (percentage w.r.t. total sequenced reads) +Pairs mappable, unique and high quality 52726 (52.73) +Pairs used 35934 (35.94) +One mate unmapped 8777 (8.78) +One mate not unique 3603 (3.60) +One mate low quality 34877 (34.88) + +# count (percentage w.r.t. mappable, unique and high quality pairs) +dangling end 209 (0.40) +self ligation (removed) 5056 (9.59) +One mate not close to rest site 751 (1.42) +same fragment (800 bp) 10146 (19.24) +self circle 618 (1.17) +duplicated pairs 12 (0.02) + +# count (percentage w.r.t. total valid pairs used) +inter chromosomal 5849 (16.28) +short range < 20kb 8071 (22.46) +long range 22014 (61.26) +inward pairs 6977 (19.42) +outward pairs 8907 (24.79) +left pairs 7012 (19.51) +right pairs 7189 (20.01)