Mercurial > repos > iuc > multiqc
diff test-data/fastqc_1.txt @ 0:3bad335ccea9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
author | iuc |
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date | Tue, 24 Oct 2017 06:29:59 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fastqc_1.txt Tue Oct 24 06:29:59 2017 -0400 @@ -0,0 +1,2181 @@ +##FastQC 0.11.4 +>>Basic Statistics pass +#Measure Value +Filename poulet5_1 +File type Conventional base calls +Encoding Sanger / Illumina 1.9 +Total Sequences 267849 +Sequences flagged as poor quality 0 +Sequence length 101 +%GC 48 +>>END_MODULE +>>Per base sequence quality warn +#Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile +1 20.91988023102569 21.0 21.0 21.0 21.0 21.0 +2 20.71684045861661 21.0 20.0 22.0 19.0 23.0 +3 20.351574954545285 21.0 20.0 21.0 18.0 22.0 +4 22.531542025544244 23.0 22.0 24.0 20.0 24.0 +5 24.673566076408722 25.0 24.0 26.0 24.0 26.0 +6 25.813099918237516 26.0 25.0 27.0 25.0 27.0 +7 27.587864804423386 28.0 27.0 29.0 26.0 29.0 +8 27.598941941168345 28.0 27.0 29.0 26.0 29.0 +9 27.07115949658203 28.0 26.0 28.0 26.0 28.0 +10-11 27.129873548155864 28.0 26.0 28.0 25.5 28.0 +12-13 27.009298149330405 27.5 26.0 28.0 25.5 28.0 +14-15 27.123565889736383 28.0 26.5 28.0 26.0 28.0 +16-17 27.086309823818645 28.0 26.0 28.0 26.0 28.0 +18-19 27.07924614241606 28.0 26.0 28.0 25.5 28.0 +20-21 27.082520375286073 28.0 26.0 28.0 26.0 28.0 +22-23 27.054301117420636 28.0 26.0 28.0 25.0 28.0 +24-25 27.06350966402712 28.0 26.0 28.0 25.0 28.0 +26-27 27.082996389756914 28.0 26.0 28.0 26.0 28.0 +28-29 27.065495857740743 28.0 26.0 28.0 25.5 28.0 +30-31 27.09608772106672 28.0 26.0 28.0 26.0 28.0 +32-33 27.087097581099798 28.0 26.0 28.0 26.0 28.0 +34-35 27.098251253504774 28.0 26.5 28.0 26.0 28.0 +36-37 27.05184077595959 28.0 26.0 28.0 25.5 28.0 +38-39 27.06521958267531 28.0 26.0 28.0 26.0 28.0 +40-41 27.072148859992012 28.0 26.0 28.0 26.0 28.0 +42-43 27.065725464720796 28.0 26.0 28.0 25.5 28.0 +44-45 27.07168031241483 28.0 26.5 28.0 25.5 28.0 +46-47 27.048083061725073 28.0 26.0 28.0 25.5 28.0 +48-49 27.04642354460909 28.0 26.0 28.0 25.5 28.0 +50-51 27.062865644448927 28.0 26.0 28.0 25.5 28.0 +52-53 27.01859629866081 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25.833215729758187 28.0 26.0 28.0 24.0 29.0 +94-95 25.503102494315826 27.5 26.0 28.0 22.5 29.0 +96-97 24.52807178671565 27.0 25.5 27.5 21.0 28.0 +98-99 23.202399486277717 26.0 24.5 26.5 10.0 27.0 +100-101 23.72906749698524 27.0 26.0 28.0 2.0 29.0 +>>END_MODULE +>>Per tile sequence quality pass +#Tile Base Mean +1101 1 0.017259946109469126 +1101 2 -0.13408255940416325 +1101 3 -0.11853598095770224 +1101 4 0.015421063929771606 +1101 5 -0.06886052494072459 +1101 6 -0.15241701542762698 +1101 7 -0.029853727500473326 +1101 8 0.04533865186875374 +1101 9 0.07102084333114078 +1101 10-11 0.02726717483210095 +1101 12-13 0.05147474989913192 +1101 14-15 -0.006227419450461014 +1101 16-17 0.051879075943595865 +1101 18-19 0.03525737425918152 +1101 20-21 0.012963832365290529 +1101 22-23 0.02506089814612622 +1101 24-25 0.07843149833360386 +1101 26-27 0.02737786083297422 +1101 28-29 0.005161107012540356 +1101 30-31 -0.08720467946375265 +1101 32-33 -0.017197404032327057 +1101 34-35 0.05763469947927646 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-0.12279121951477734 +2208 84-85 -0.20884928087605914 +2208 86-87 -0.3596062041577319 +2208 88-89 -0.08637910286264372 +2208 90-91 -0.993780535933837 +2208 92-93 -0.26723742984468046 +2208 94-95 -0.4391510258693856 +2208 96-97 -0.5338388591234597 +2208 98-99 -0.5674666924173444 +2208 100-101 -0.677027788148628 +>>END_MODULE +>>Per sequence quality scores warn +#Quality Count +2 91.0 +3 0.0 +4 0.0 +5 0.0 +6 1.0 +7 4.0 +8 1.0 +9 4.0 +10 19.0 +11 20.0 +12 36.0 +13 57.0 +14 112.0 +15 185.0 +16 315.0 +17 488.0 +18 667.0 +19 878.0 +20 1127.0 +21 1933.0 +22 2846.0 +23 4426.0 +24 7254.0 +25 15604.0 +26 147526.0 +27 84255.0 +>>END_MODULE +>>Per base sequence content fail +#Base G A T C +1 24.561095571182623 12.690042536664064 10.404490437653351 52.344371454499964 +2 18.339437518900574 21.261606352833127 40.84540170021169 19.55355442805461 +3 24.3623968130108 22.75060764115756 24.606199993279546 28.28079555255209 +4 24.70272429615194 30.13376939992309 20.251335640603475 24.912170663321497 +5 26.912278605776415 30.437785609748815 22.448552910606015 20.201382873868763 +6 21.71820690015643 32.44626636649754 23.826857669806493 22.008669063539532 +7 20.05719640543739 18.11617739845958 38.19876124234177 23.62786495376126 +8 20.67097506430862 21.73762082367304 30.101661757184083 27.489742354834252 +9 21.03797288770912 20.6063864341476 32.13340352213374 26.22223715600954 +10-11 24.92953119108154 29.215714824397327 22.228755754174927 23.6259982303462 +12-13 23.055154210021318 24.05403790941911 27.701242117760376 25.189565762799187 +14-15 23.740988392713806 25.209166358657303 26.766200359157583 24.283644889471308 +16-17 24.568320210267725 25.528936079656823 25.649339739928095 24.253403970147357 +18-19 24.04209087956274 25.55880365429776 25.791957408838563 24.607148057300943 +20-21 23.93419426617236 25.75256954478083 26.05945887421644 24.253777314830373 +22-23 24.163987918566058 25.89910733286292 25.740809187265963 24.196095561305064 +24-25 23.988702589892068 25.91833458403802 25.975642992880317 24.117319833189597 +26-27 23.946327968370237 26.093246568029 25.94857550336197 24.01184996023879 +28-29 23.988889262233574 25.78393049815381 25.775716915127557 24.451463324485065 +30-31 23.98944927925809 25.67715391881247 26.00980403137589 24.32359277055356 +32-33 23.93998110875904 26.05105861884868 26.071779248755828 23.93718102363645 +34-35 24.114706420408513 25.96780275453707 25.658300012320375 24.25919081273404 +36-37 23.890886282943 25.775530242786047 25.919454618087055 24.414128856183893 +38-39 23.981422368573337 25.796064200351694 26.301572901149527 23.920940529925446 +40-41 23.981422368573337 25.791397391814048 26.08111286583112 24.146067373781495 +42-43 23.894806402114625 25.829665221822744 26.05553875504482 24.219989621017813 +44-45 23.729228035198936 26.04489843157899 26.20394326654197 24.02193026668011 +46-47 24.046010998734364 25.874839928467157 25.88977371578763 24.189375357010853 +48-49 24.049744445564478 25.742302565998003 25.94857550336197 24.259377485075547 +50-51 23.948381364126803 26.056285444410843 26.02343111230581 23.97190207915654 +52-53 23.98758255584303 26.181169240878255 25.754062923512876 24.07718527976584 +54-55 24.002329670821993 25.763956557612683 26.049005223092113 24.184708548473207 +56-57 24.145694029098486 25.93812185223764 26.200956509077876 23.715227609585998 +58-59 24.10443944162569 26.029031282550992 25.90638755418165 23.96014172164167 +60-61 23.907500121337023 25.956415741705214 26.048818550750607 24.087265586207156 +62-63 23.989262606916583 25.956975758729733 26.25397145406554 23.799790180288145 +64-65 24.19852230174464 25.83377201333587 25.889960388129136 24.077745296790358 +66-67 23.939421091734523 25.92654816706428 26.010737393083417 24.123293348117784 +68-69 23.959021687592635 25.83750546016599 26.237170943330014 23.966301908911365 +70-71 23.97992898984129 26.19087620263656 25.813424728111734 24.015770079410416 +72-73 23.799976852629655 26.096606670176108 26.129087657598127 23.974328819596117 +74-75 24.05739801156622 26.019324320792688 26.18191593024428 23.741361737396815 +76-77 24.116013126799054 25.837318787824483 26.0995934276402 23.947074657736263 +78-79 24.028463798632814 26.152981717310876 25.835452064409424 23.98310241964689 +80-81 24.037984088049612 25.988336712102715 26.165115419508755 23.808563780338922 +82-83 24.09286575645233 25.723635331847422 26.134501155501795 24.048997756198457 +84-85 23.749388648081567 25.817531519624865 26.270771964801064 24.162307867492505 +86-87 23.906566759629495 26.199276458004324 26.24613121572229 23.648025566643895 +88-89 24.194788854914524 25.881373460419866 25.988710056785724 23.935127627879886 +90-91 24.30641891513502 25.716915127553207 25.838438821873517 24.13822713543825 +92-93 23.89331302338258 26.09231320632147 26.2431444582582 23.771229312037754 +94-95 24.343006694070166 25.78803728966694 25.850945868754412 24.018010147508484 +96-97 24.293351851229612 25.853745953877 25.936815145847103 23.916087049046293 +98-99 24.295965264010693 25.91702787764748 26.050311929482657 23.73669492885917 +100-101 24.65138940223783 25.744542634096078 25.755742974586425 23.848324989079668 +>>END_MODULE +>>Per sequence GC content pass +#GC Content Count +0 0.0 +1 0.0 +2 0.0 +3 0.0 +4 0.0 +5 0.0 +6 0.0 +7 0.0 +8 0.0 +9 0.0 +10 0.0 +11 0.0 +12 0.0 +13 0.0 +14 0.5 +15 2.0 +16 5.0 +17 7.5 +18 10.5 +19 15.5 +20 20.0 +21 28.5 +22 42.5 +23 63.0 +24 126.5 +25 228.0 +26 385.0 +27 545.0 +28 720.0 +29 1080.5 +30 1474.5 +31 1743.5 +32 2015.0 +33 2324.0 +34 2747.0 +35 3375.5 +36 3996.5 +37 4590.5 +38 5365.0 +39 6219.5 +40 7284.0 +41 8648.0 +42 9680.5 +43 10325.5 +44 10906.0 +45 11123.5 +46 11325.5 +47 12122.5 +48 12960.5 +49 13030.0 +50 12518.5 +51 11744.0 +52 10781.0 +53 10248.5 +54 10433.5 +55 9922.0 +56 8785.5 +57 7997.0 +58 6901.0 +59 5796.0 +60 4967.0 +61 4072.5 +62 3639.5 +63 3267.0 +64 2561.5 +65 2002.5 +66 1561.5 +67 1355.5 +68 1222.0 +69 1019.0 +70 803.0 +71 568.5 +72 371.5 +73 235.0 +74 164.5 +75 110.5 +76 70.5 +77 56.0 +78 39.5 +79 27.0 +80 18.0 +81 17.0 +82 15.5 +83 12.5 +84 6.5 +85 1.5 +86 0.0 +87 0.0 +88 0.0 +89 0.0 +90 0.0 +91 0.0 +92 0.0 +93 0.0 +94 0.0 +95 0.0 +96 0.0 +97 0.0 +98 0.0 +99 0.0 +100 0.0 +>>END_MODULE +>>Per base N content pass +#Base N-Count +1 0.029867574640935753 +2 0.0 +3 0.003733446830116969 +4 0.0 +5 3.733446830116969E-4 +6 0.0 +7 0.0 +8 0.0 +9 0.0 +10-11 0.0 +12-13 0.0 +14-15 0.0 +16-17 0.0 +18-19 0.0 +20-21 0.0 +22-23 0.0 +24-25 0.0 +26-27 0.0 +28-29 0.0 +30-31 0.0 +32-33 0.0 +34-35 0.0 +36-37 0.0 +38-39 0.0 +40-41 0.0 +42-43 0.0 +44-45 0.0 +46-47 0.0 +48-49 0.0 +50-51 0.0 +52-53 0.0 +54-55 0.0 +56-57 0.0 +58-59 0.0 +60-61 0.0 +62-63 0.0 +64-65 0.0 +66-67 0.0 +68-69 0.0 +70-71 0.0 +72-73 0.0 +74-75 0.0 +76-77 0.0 +78-79 0.0 +80-81 0.0 +82-83 0.0 +84-85 0.0 +86-87 0.0 +88-89 0.0 +90-91 0.0 +92-93 0.0 +94-95 0.0 +96-97 0.0 +98-99 0.0 +100-101 0.0 +>>END_MODULE +>>Sequence Length Distribution pass +#Length Count +101 267849.0 +>>END_MODULE +>>Sequence Duplication Levels warn +#Total Deduplicated Percentage 63.69408840068983 +#Duplication Level Percentage of deduplicated Percentage of total +1 81.5623716290639 51.950409087115126 +2 9.995611185249079 12.733226849043577 +3 3.1947144335386772 6.104532706343167 +4 1.4905270052149588 3.797510353351082 +5 0.8725392208870194 2.778779513412342 +6 0.55360835935223 2.115694786796508 +7 0.38537193434967776 1.718213983752925 +8 0.314619574221819 1.603152557845755 +9 0.2033036957962869 1.1654319215012086 +>10 1.4223398099582591 15.850860027094066 +>50 0.0049931523680946535 0.18218821374420768 +>100 0.0 0.0 +>500 0.0 0.0 +>1k 0.0 0.0 +>5k 0.0 0.0 +>10k+ 0.0 0.0 +>>END_MODULE +>>Overrepresented sequences pass +>>END_MODULE +>>Adapter Content pass +#Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence SOLID Small RNA Adapter +1 0.0 0.0 0.0 0.0 +2 0.0 0.0 0.0 0.0 +3 0.0 0.0 0.0 0.0 +4 0.0 0.0 0.0 0.0 +5 0.0 0.0 0.0 0.0 +6 0.0 0.0 0.0 0.0 +7 0.0 0.0 0.0 0.0 +8 0.0 0.0 0.0 0.0 +9 0.0 0.0 0.0 0.0 +10-11 0.0 0.0 0.0 0.0 +12-13 0.0 0.0 0.0 0.0 +14-15 0.0 0.0 0.0 0.0 +16-17 0.0 0.0 0.0 0.0 +18-19 0.0 0.0 0.0 0.0 +20-21 0.0 0.0 0.0 0.0 +22-23 0.0 0.0 0.0 0.0 +24-25 0.0 0.0 0.0 0.0 +26-27 0.0 0.0 0.0 0.0 +28-29 0.0 0.0 0.0 0.0 +30-31 0.0 0.0 0.0 0.0 +32-33 0.0 0.0 0.0 0.0 +34-35 0.0 0.0 0.0 0.0 +36-37 0.0 0.0 0.0 0.0 +38-39 0.0 0.0 0.0 0.0 +40-41 0.0 0.0 0.0 0.0 +42-43 0.0 0.0 0.0 0.0 +44-45 0.0 0.0 0.0 0.0 +46-47 0.0 0.0 0.0 0.0 +48-49 0.0 0.0 0.0 0.0 +50-51 0.0 0.0 0.0 0.0 +52-53 0.0 0.0 0.0 0.0 +54-55 0.0 0.0 0.0 0.0 +56-57 0.0 0.0 0.0 0.0 +58-59 0.0 0.0 0.0 0.0 +60-61 0.0 0.0 0.0 0.0 +62-63 0.0 0.0 0.0 0.0 +64-65 0.0 0.0 0.0 0.0 +66-67 0.0 0.0 0.0 0.0 +68-69 0.0 0.0 0.0 0.0 +70-71 0.0 0.0 0.0 0.0 +72-73 0.0 0.0 0.0 0.0 +74-75 0.0 0.0 0.0 0.0 +76-77 0.0 0.0 0.0 0.0 +78-79 0.0 0.0 0.0 0.0 +80-81 0.0 0.0 0.0 0.0 +82-83 0.0 0.0 0.0 0.0 +84-85 0.0 0.0 0.0 0.0 +86-87 0.0 0.0 0.0 0.0 +88-89 0.0 0.0 0.0 0.0 +>>END_MODULE +>>Kmer Content warn +#Sequence Count PValue Obs/Exp Max Max Obs/Exp Position +TTAGTGG 50 0.0016122013 38.00672 3 +CCGGGAA 65 0.0058204937 29.246862 1 +CTCGCCA 65 0.0058204937 29.246862 1 +CCCGCTT 70 0.008357804 27.157803 1 +AACAATT 125 0.006013185 19.00336 2 +CTGGGAT 205 3.3062082E-4 16.228443 1 +AGTTCAA 195 0.0044498937 14.615241 5 +GAGTAGT 125 0.0014974214 13.29987 30-31 +AAGTTCA 220 0.009890434 12.954418 4 +CTGAAAT 275 0.003044474 12.097567 1 +CCCAGCT 405 3.2130985E-5 11.734852 1 +AGGGTGT 145 0.0045575905 11.465405 66-67 +CTGAATT 335 0.001024679 11.349529 1 +CTTGAAT 295 0.0051441877 11.277392 1 +GAATGTC 425 6.555659E-4 10.058724 4 +GGTAGTA 190 0.002949709 9.999902 52-53 +CTCTGCC 390 0.0036302158 9.748955 1 +CTCCTTT 535 5.356131E-4 8.883393 1 +CTTTGCT 500 0.0028739348 8.5547085 1 +>>END_MODULE