Mercurial > repos > iuc > multiqc

diff test-data/quast.tsv @ 0:3bad335ccea9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
author: iuc
date: Tue, 24 Oct 2017 06:29:59 -0400
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/quast.tsv	Tue Oct 24 06:29:59 2017 -0400
@@ -0,0 +1,48 @@
+Assembly	14892_1#15
+# contigs (>= 0 bp)	545
+# contigs (>= 1000 bp)	376
+# contigs (>= 5000 bp)	242
+# contigs (>= 10000 bp)	215
+# contigs (>= 25000 bp)	181
+# contigs (>= 50000 bp)	123
+Total length (>= 0 bp)	18465341
+Total length (>= 1000 bp)	18373173
+Total length (>= 5000 bp)	18079934
+Total length (>= 10000 bp)	17893099
+Total length (>= 25000 bp)	17353907
+Total length (>= 50000 bp)	15112131
+# contigs	467
+Largest contig	435484
+Total length	18435361
+Reference length	18916112
+GC (%)	48.17
+Reference GC (%)	48.21
+N50	115136
+NG50	112874
+N75	62262
+NG75	56990
+L50	48
+LG50	50
+L75	100
+LG75	106
+# misassemblies	107
+# misassembled contigs	82
+Misassembled contigs length	4540800
+# local misassemblies	132
+# unaligned contigs	8 + 59 part
+Unaligned length	88446
+Genome fraction (%)	95.482
+Duplication ratio	1.016
+# N's per 100 kbp	929.55
+# mismatches per 100 kbp	262.21
+# indels per 100 kbp	33.75
+# genes	7280 + 968 part
+Largest alignment	356982
+NA50	102129
+NGA50	99244
+NA75	54365
+NGA75	51757
+LA50	56
+LGA50	59
+LA75	117
+LGA75	124