Mercurial > repos > iuc > multiqc
diff test-data/samblaster.txt @ 0:3bad335ccea9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
| author | iuc |
|---|---|
| date | Tue, 24 Oct 2017 06:29:59 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/samblaster.txt Tue Oct 24 06:29:59 2017 -0400 @@ -0,0 +1,15 @@ +samblaster: Version 0.1.22 +samblaster: Inputting from stdin +samblaster: Outputting to stdout +samblaster: Opening /vagrant/test-out6/virtual-normal-samblaster-markdups.txt for write. +[bam_header_read] EOF marker is absent. The input is probably truncated. +[M::mem_pestat] skip orientation FF as there are not enough pairs +[M::mem_pestat] skip orientation FR as there are not enough pairs +[M::mem_pestat] skip orientation RF as there are not enough pairs +[M::mem_pestat] skip orientation RR as there are not enough pairs +samblaster: Loaded 86 header sequence entries. +samblaster: Removed 1 of 78 (1.28%) read ids as duplicates using 1724k memory in 0.000S CPU seconds and 31S wall time. +[main] Version: 0.7.7-r441 +[main] CMD:[samopen] SAM header is present: 86 sequences. + bwa mem -M -v 1 -R @RG\tID:virtual-normal\tSM:virtual-normal\tLB:virtual-normal\tPL:ILLUMINA -t 2 /proj/b2010040/private/nobackup/autoseq-genome/bwa/human_g1k_v37_decoy.fasta /vagrant/test-out6/skewer/virtual-normal_1.fastq.gz /vagrant/test-out6/skewer/virtual-normal_2.fastq.gz +[main] Real time: 30.780 sec; CPU: 13.292 sec