Mercurial > repos > iuc > multiqc
diff multiqc.xml @ 5:5746cb5cf08d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 36465d526cea3d061724952bb6cf63ee8dd069bf
| author | iuc |
|---|---|
| date | Tue, 05 Dec 2017 05:24:03 -0500 |
| parents | e4574a4d09d8 |
| children | 01237d721a9f |
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--- a/multiqc.xml Fri Dec 01 09:07:15 2017 -0500 +++ b/multiqc.xml Tue Dec 05 05:24:03 2017 -0500 @@ -1,4 +1,4 @@ -<tool id="multiqc" name="MultiQC" version="@WRAPPER_VERSION@.0"> +<tool id="multiqc" name="MultiQC" version="@WRAPPER_VERSION@.1"> <description>aggregate results from bioinformatics analyses into a single report</description> <macros> <token name="@WRAPPER_VERSION@">1.2</token> @@ -107,12 +107,12 @@ #elif str($repeat.software_cond.software) == "featureCounts" #for $file in $repeat.software_cond.input #set file_prefix = $software_dir + '/' + str($file.element_identifier) - #if $file.metadata.column_names and $file.metadata.column_names.find(',') != -1 - echo '$file.metadata.column_names.replace(',','\t').replace('__ob__u','').replace('u__sq__','').replace('__sq__','').replace('__cb__','')' >> '${file_prefix}.summary' && - cat '$file' >> '${file_prefix}.summary' && - #else - ln -s '$file' '${file_prefix}.summary' && - #end if + if grep -qw Status '$file'; then + ln -s '$file' '${file_prefix}.summary'; + else + echo -e 'Status\t$file.element_identifier' > '${file_prefix}.summary'; + cat '$file' >> '${file_prefix}.summary'; + fi && #end for #elif str($repeat.software_cond.software) == "flexbar" #set $pattern = "flexible barcode and adapter removal"