Mercurial > repos > iuc > multiqc
diff multiqc.xml @ 1:6999173dc0c2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 110247de01764a544371d07eaed0308429a47daa
| author | iuc |
|---|---|
| date | Fri, 27 Oct 2017 19:40:36 -0400 |
| parents | 3bad335ccea9 |
| children | 39f063be9fb4 |
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--- a/multiqc.xml Tue Oct 24 06:29:59 2017 -0400 +++ b/multiqc.xml Fri Oct 27 19:40:36 2017 -0400 @@ -108,7 +108,7 @@ #for $file in $repeat.software_cond.input #set file_prefix = $software_dir + '/' + str($file.element_identifier) #if $file.metadata.column_names and $file.metadata.column_names.find(',') != -1 - echo '$file.metadata.column_names.replace(',','\t').replace('__ob__u','').replace('u__sq__','').replace('__sq__','').replace('__cb__','')' >> '$file_prefix.summary' && + echo '$file.metadata.column_names.replace(',','\t').replace('__ob__u','').replace('u__sq__','').replace('__sq__','').replace('__cb__','')' >> '${file_prefix}.summary' && cat '$file' >> '${file_prefix}.summary' && #else ln -s '$file' '${file_prefix}.summary' && @@ -322,7 +322,7 @@ ln -s '$file' '${software_dir}/file_${i}_${j}' && more $file && #end for - #end if + #end if #end for multiqc multiqc_WDir @@ -531,7 +531,7 @@ </when> <when value="junction_saturation"> <param name="input" type="data" format="txt" multiple="true" label="RSeQC junction_saturation output"/> - </when> + </when> <when value="read_distribution"> <param name="input" type="data" format="txt,xls,tabular" multiple="true" label="RSeQC read_distribution output" help="It should contain 'Group Total_bases Tag_count Tags/Kb'"/> </when>