Mercurial > repos > iuc > multiqc
diff test-data/diamond.log @ 27:7591bce96601 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
| author | iuc |
|---|---|
| date | Tue, 18 Feb 2025 23:18:25 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/diamond.log Tue Feb 18 23:18:25 2025 +0000 @@ -0,0 +1,180 @@ +diamond blastp --quiet --threads 1 --db ./database --query /tmp/tmpxfb7idqd/files/e/4/f/dataset_e4f75201-863d-4397-8ca7-7c0b79593e9d.dat --no-self-hits --outfmt 0 --out /tmp/tmpxfb7idqd/job_working_directory/000/3/outputs/dataset_0fb25f52-9d9b-4592-a709-7e516f37daa1.dat --compress 0 --algo 0 --matrix BLOSUM62 --comp-based-stats 1 --masking 1 --max-target-seqs 25 --evalue 0.001 --id 0 --query-cover 0 --subject-cover 0 --block-size 2.0 --motif-masking 0 --log +diamond v2.0.15.153 +#CPU threads: 1 +Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) +CPU features detected: ssse3 popcnt sse4.1 avx2 +Runtime dispatch: disabled +L3 cache size: 8388608 +MAX_SHAPE_LEN=19 SEQ_MASK STRICT_BAND +Temporary directory: /tmp/tmpxfb7idqd/job_working_directory/000/3/outputs +#Target sequences to report alignments for: 25 +DP fields: 1 +Opening the database... [0s] +Database: ./database.dmnd (type: Diamond database, sequences: 2, letters: 568) +Block size = 2000000000 +Opening the input file... [0s] +Opening the output file... [0s] +Loading query sequences... [0s] +Sequences = 2, letters = 566, average length = 283 +Masking queries... [0s] +Current RSS: 6.8 MB, Peak RSS: 6.8 MB +Algorithm: Double-indexed +Shape configuration: 111101110111,111011010010111 +Building query histograms... [0s] +Allocating buffers... [0s] +Current RSS: 6.9 MB, Peak RSS: 6.9 MB +Loading reference sequences... [0s] +Sequences = 2, letters = 568, average length = 284 +Current RSS: 6.9 MB, Peak RSS: 6.9 MB +Masking reference... [0s] +Masked letters: 0 +Initializing temporary storage... Async_buffer() 2,1 + [0s] +Building reference histograms... [0s] +Allocating buffers... [0s] +Current RSS: 6.9 MB, Peak RSS: 7.0 MB +Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4. +Building reference seed array... [0s] +Building query seed array... [0s] +Indexed query seeds = 97875695011120/566 (17292525620339.22%), reference seeds = 0/568 (0.00%) +Soft masked letters = 0/566 (0.00%), 0/568 (0.00%) +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Masked seeds: 0/57 (0.00%) +Masked positions (query): 0/566 (0.00%) +Masked positions (target): 0/568 (0.00%) +Searching alignments... [0s] +Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4. +Building reference seed array... [0s] +Building query seed array... [0s] +Indexed query seeds = 2560271741526742528/566 (452344830658435072.00%), reference seeds = 0/568 (0.00%) +Soft masked letters = 0/566 (0.00%), 0/568 (0.00%) +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Masked seeds: 0/57 (0.00%) +Masked positions (query): 0/566 (0.00%) +Masked positions (target): 0/568 (0.00%) +Searching alignments... [0s] +Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4. +Building reference seed array... [0s] +Building query seed array... [0s] +Indexed query seeds = 2560271741526742528/566 (452344830658435072.00%), reference seeds = 0/568 (0.00%) +Soft masked letters = 0/566 (0.00%), 0/568 (0.00%) +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Masked seeds: 0/65 (0.00%) +Masked positions (query): 0/566 (0.00%) +Masked positions (target): 0/568 (0.00%) +Searching alignments... [0s] +Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4. +Building reference seed array... [0s] +Building query seed array... [0s] +Indexed query seeds = 129/566 (22.79%), reference seeds = 107/568 (18.84%) +Soft masked letters = 0/566 (0.00%), 0/568 (0.00%) +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Masked seeds: 0/60 (0.00%) +Masked positions (query): 0/566 (0.00%) +Masked positions (target): 0/568 (0.00%) +Searching alignments... [0s] +Current RSS: 9.1 MB, Peak RSS: 9.2 MB +Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4. +Building reference seed array... [0s] +Building query seed array... [0s] +Indexed query seeds = 97875695011120/566 (17292525620339.22%), reference seeds = 107/568 (18.84%) +Soft masked letters = 0/566 (0.00%), 0/568 (0.00%) +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Masked seeds: 0/58 (0.00%) +Masked positions (query): 0/566 (0.00%) +Masked positions (target): 0/568 (0.00%) +Searching alignments... [0s] +Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4. +Building reference seed array... [0s] +Building query seed array... [0s] +Indexed query seeds = 2560271741526742528/566 (452344830658435072.00%), reference seeds = 107/568 (18.84%) +Soft masked letters = 0/566 (0.00%), 0/568 (0.00%) +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Masked seeds: 0/66 (0.00%) +Masked positions (query): 0/566 (0.00%) +Masked positions (target): 0/568 (0.00%) +Searching alignments... [0s] +Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4. +Building reference seed array... [0s] +Building query seed array... [0s] +Indexed query seeds = 2560271741526742528/566 (452344830658435072.00%), reference seeds = 107/568 (18.84%) +Soft masked letters = 0/566 (0.00%), 0/568 (0.00%) +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Masked seeds: 0/46 (0.00%) +Masked positions (query): 0/566 (0.00%) +Masked positions (target): 0/568 (0.00%) +Searching alignments... [0s] +Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4. +Building reference seed array... [0s] +Building query seed array... [0s] +Indexed query seeds = 120/566 (21.20%), reference seeds = 102/568 (17.96%) +Soft masked letters = 0/566 (0.00%), 0/568 (0.00%) +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Masked seeds: 0/60 (0.00%) +Masked positions (query): 0/566 (0.00%) +Masked positions (target): 0/568 (0.00%) +Searching alignments... [0s] +Deallocating buffers... [0s] +Clearing query masking... [0s] +Computing alignments... Async_buffer.load() 17(2.37487e-07 GB, 1.4063e-07 GB on disk) +Loading trace points... [0s] +Sorting trace points... [0s] +Computing alignments... [0.01s] +Deallocating buffers... [0s] +Loading trace points... [0s] + [0.011s] +Deallocating reference... [0s] +Loading reference sequences... [0s] +Current RSS: 9.6 MB, Peak RSS: 9.6 MB +Deallocating buffers... [0s] +Current RSS: 9.6 MB, Peak RSS: 9.6 MB +Deallocating queries... [0s] +Loading query sequences... [0s] +Closing the input file... [0s] +Closing the output file... [0s] +Cleaning up... [0s] +Current RSS: 9.6 MB, Peak RSS: 9.6 MB +Total time = 0.093s +Hits (filter stage 0) = 774 +Hits (filter stage 1) = 774 (100 %) +Hits (filter stage 2) = 774 (100 %) +Hits (filter stage 3) = 17 (2.19638 %) +Target hits (stage 0) = 2 +Target hits (stage 1) = 0 +Target hits (stage 2) = 2 +Target hits (stage 3) = 2 (0 (0%) with CBS) +Target hits (stage 4) = 2 +Target hits (stage 5) = 2 +Swipe realignments = 0 +Matrix adjusts = 0 +Extensions (8 bit) = 0 +Extensions (16 bit) = 4 +Extensions (32 bit) = 0 +Hard queries = 0 +Gapped filter (targets) = 0 +Gapped filter (hits) stage 1 = 0 +Gapped filter (hits) stage 2 = 0 +Time (Load seed hit targets) = 4e-06s (CPU) +Time (Sort targets by score) = 0s (CPU) +Time (Gapped filter) = 0s (CPU) +Time (Matrix adjust) = 0s (CPU) +Time (Chaining) = 2e-05s (CPU) +Time (DP target sorting) = 0s (CPU) +Time (Smith Waterman) = 6.9e-05s (CPU) +Time (Smith Waterman TB) = 0.0001s (CPU) +Time (Traceback) = 8e-06s (CPU) +Time (Target parallel) = 0s (wall) +Time (Load seed hits) = 0.000495s (wall) +Time (Sort seed hits) = 2.4e-05s (wall) +Time (Extension) = 0.010185s (wall) +Temporary disk space used (search): 1.4063e-07 GB +Reported 2 pairwise alignments, 2 HSPs. +1 queries aligned.